1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaatgctctctgacagttattatgccaattatatatgaatgatcttgttcatgtgttcaattttaggccttctggtctgcttctgagtttttcactttctgttgatgcagCAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCACAAACG
species | Glycine max |
transcript | GLYMA02G05950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTGATTTCAGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG CAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCAEST: gi|9204371|gb|BE330595.1|BE330595
genomic: TGTTGATTTCAGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAGgtaatgctct ... gttgatgcagCAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCA
EST: AGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG CAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCAEST: gi|192329022|gb|FK021404.1|FK021404
genomic: AGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAGgtaatgctct ... gttgatgcagCAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCA
EST: AGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAG CAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCA
genomic: AGTGGCTGGACTGGTTATCTTTTCGAGTATGATCAAAAGgtaatgctct ... gttgatgcagCAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCA
ttcaattttaggccttctggtctgcttctgagtttttcactttctgttgatgcagCAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCACAAACG
tgttgat putative branch site (score: 4)
tttttcactttctgtt CT-rich tract
agttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctctctgacagttattatgccaattatatatgaatgatcttgttcatgtgttcaattttaggccttctggtctgcttctgagtttttcactttctgttgatgcagCAAGGTTCTGATTTGTCCGTGCGATTCTGCAAAGATGTGGAGAGTAGATCACAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA