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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgaaatctgaactcatcaatgaatcactgcattgctttgtcattctcaaaatccttatatcgattatattttcacttttcacagCGCACAGAAAGGGAATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTC

Basic information

species Glycine max
transcript GLYMA02G05650.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05650.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatgaaatctgaactcatcaatgaatcactgcatt----gctttgtcattctcaaaatccttatatcgattatattttcactt-ttcacagCGCACAGAAAGGGAATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTC
||||   |||    |    ||||     |  |  |  |    | |   | |||  | |  |||||  ||  |  | ||| | |    ||   ||| ||  ||||| |||||| |||||||||| || ||  ||||||| || |||||||||||||| ||||| || ||    || | | | || ||  ||||||
gtaatcaaaacaccactatatcatcccctttcctctctttcagttccataatttcccatttcctttgatgaaaaaaattgttatacatttgtagCACAAGGAAAGAGAATTTCTTTTGAAGTTCTCTGCTATGGAGATTTACAATGAATCTGTCAGAGACCTTCTCAGCTCAGATACTGCTCCGCTTCGACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgctttgtcattctcaaaatccttatatcgattatattttcacttttcacagCGCACAGAAAGGGAATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTC
                                     tattttcacttttc  CT-rich tract
                         ttatatcgattatatt  TA-rich tract