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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttccactatagtccaaagtttaagttcctagtgttgctcaaatttagaatgcacttctacatgttacctttaatgtaaatgtgatgtttccataataattgtaaagaactatatcctatttatattaattaaaaagtgctaataaattgtgtgttattttcattttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTG

Basic information

species Glycine max
transcript GLYMA02G05160.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05160.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G846811_T01 (Zea mays), 3'ss of exon 3
gtactttttccactatagtccaaagtttaagttcctagtgttgctcaaatttagaatgcacttctacatgttacctttaatgtaaatgtgatgtttccataataattgtaaagaactatatcctatttatattaattaaaaa----gtgctaataaattgtgtgttattttcattttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTG
                                                                                ||||  ||  |   |||   || |    |     | ||      || || ||   |   |||     || |     | | ||      ||  ||||||||||||| || ||  |||| ||||||||||||| ||| || |||||| | || |||||||||||||
-------------------------------------------------------------------------------gtgtac-tgaaacagttctccaaaatccatttttgaataggattaatatagatggctcccaaactttttgtttgctgactctgaaccccttctattttcagTGGATACCTGAACTGAAGCATTATGCACCTGGTGTGCCAATTATTCTCGTAGGGACAAAGCTTG

upper sequence: GLYMA02G05160.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 3'ss of exon 4
gtactttttccactatagtccaaagtttaagttcctagtgttgctcaaatttagaatgcacttctacatgttacctttaatgtaaatgtgatgtttccataataattgtaaagaactatatcctatttatattaattaaaaa-gtgctaataaattgtgtgttattt-----tcattttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTG
                                                                 || || |   |  ||   || ||  |    |   || | |  |||||| | ||     | |  ||   |||| |  | || ||   | ||| | |  | |||     ||||||||||||||||||||| ||||| ||||||||||||| |||||| ||  || | ||||| || |||||||
-----------------------------------------------------------gtgaggacttgatggatcaaaatgaagtgatagcactttttagtga--gtaaaggaataccaattttagatggcaatttattatgtcctgggagattttttaatgtttcggcttcattttcagTGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctatttatattaattaaaaagtgctaataaattgtgtgttattttcattttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTG
                      tgctaat  putative branch site (score: 2)
                                       ttattttcattttc  putative PPT
     ttatattaattaaaaa  TA-rich tract