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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccaaatttcttcttttttggagaaaaaaaaagctagaccaaacattaccttaaacttatcatgtataatacaacttagtaatgaaatttttgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAGGAACCGTTGTATGCTAAGTTTCGTGTGCGGGAAGGTTTTAAGAGGCCCA

Basic information

species Glycine max
transcript GLYMA02G05030.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05030.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G51370.1 (Arabidopsis thaliana), 3'ss of exon 3
ccaaatttcttcttttttggagaaaaaaaaagctagac-caaacatta----ccttaaacttatcatgtataatacaacttagta----atgaaatttttgtg---tggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAGGAACCGTTGTATGCTAAGTTTCGTGTGCGGGAAGGTTTTAAGAGGCCCA
             |   || ||| |  | |  ||||   |||||  ||      | ||  | ||| || | | |  || | |  |    | || || |||||    | |||||| ||||||||||| ||||| || || || |||||||| || || ||||||||||| |||||  | |||| | |  | || |||   || || || || |
------------ctgcatgtagacagtagacactaggtgcaaacgctagatatgtcaagataatcctggagattgaaattgaaaaggctaagatatgtttgttcctttgcagATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACCATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207824535|gb|GD795897.1|GD795897
EST:     TGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: TGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|58023975|gb|CX710716.1|CX710716
EST:     AA-TGTGGTTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATNGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AATTGTGG-TTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208260021|gb|GE060275.1|GE060275
EST:     CGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: CGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208076966|gb|GD876441.1|GD876441
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193674245|gb|FK616427.1|FK616427
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTC-AGATCCATTGGCAATGTA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTA
EST: gi|207827962|gb|GD798777.1|GD798777
EST:     AAATTGTGGTTCTAAAGCGCAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|207759667|gb|GD731352.1|GD731352
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208143100|gb|GD941026.1|GD941026
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATATATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|207695720|gb|GD677243.1|GD677243
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCT
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCT
EST: gi|208305697|gb|GE109110.1|GE109110
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAA
EST: gi|207782568|gb|GD751913.1|GD751913
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCT-AAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208127489|gb|GD924815.1|GD924815
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCAATGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208066436|gb|GD866011.1|GD866011
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAA-G-CTGAATTTAACTAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAAC-AA
EST: gi|207823051|gb|GD794426.1|GD794426
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGGTGTATACCTAAAAAAGGCTGAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAA
EST: gi|193535739|gb|FK488755.1|FK488755
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193710697|gb|FK644655.1|FK644655
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193517661|gb|FK474868.1|FK474868
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAGAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193403564|gb|FK366934.1|FK366934
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCAGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193458894|gb|FK424655.1|FK424655
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193731697|gb|FK667539.1|FK667539
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|58024161|gb|CX710902.1|CX710902
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACTTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193691479|gb|FK628434.1|FK628434
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAA
EST: gi|207708942|gb|GD692122.1|GD692122
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTNAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193696914|gb|FK638812.1|FK638812
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACGG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208183582|gb|GD987432.1|GD987432
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193526520|gb|FK483794.1|FK483794
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAA-GGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208086076|gb|GD885116.1|GD885116
EST:     AAATTGTGGTTCTAAAGCACAATGCATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193595124|gb|FK548593.1|FK548593
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATAACCTAAAAAAGGCTGAATTTAACAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATA-CCTAAAAAAGGCTGAATTTAACAA
EST: gi|193342051|gb|FK308971.1|FK308971
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193406352|gb|FK373001.1|FK373001
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATCTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208267852|gb|GE071227.1|GE071227
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGG
EST: gi|207764269|gb|GD735298.1|GD735298
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTCGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTT
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTT
EST: gi|193424316|gb|FK391201.1|FK391201
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATA
EST: gi|192327741|gb|FK022370.1|FK022370
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTTTAGATCCATTGGCGATGTATACCTAAAAAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAA
EST: gi|193703726|gb|FK640928.1|FK640928
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|207837123|gb|GD808432.1|GD808432
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTT
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTT
EST: gi|192309158|gb|FG999091.1|FG999091
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193448389|gb|FK415942.1|FK415942
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|208309252|gb|GE107986.1|GE107986
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193576551|gb|FK538366.1|FK538366
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAA-GGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193602478|gb|FK555773.1|FK555773
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATAACCTAAAAAAGGCTAGAAATTTAAC
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATA-CCTAAAAAAGGCT-GAA-TTTAAC
EST: gi|193514830|gb|FK470124.1|FK470124
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATAACCTAAAAAAGGCTGAATTTAACAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATA-CCTAAAAAAGGCTGAATTTAACAA
EST: gi|193438640|gb|FK401875.1|FK401875
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|207773114|gb|GD743580.1|GD743580
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193533958|gb|FK489841.1|FK489841
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAAC
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAAC
EST: gi|208062702|gb|GD860807.1|GD860807
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAA
EST: gi|193519891|gb|FK476342.1|FK476342
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193728397|gb|FK666385.1|FK666385
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
EST: gi|193379678|gb|FK344494.1|FK344494
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATAACCTAAAAAAGGCTGAATTTAACAA
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATA-CCTAAAAAAGGCTGAATTTAACAA
EST: gi|193563494|gb|FK521383.1|FK521383
EST:     AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGG-TCTGATACAG                         ATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG
genomic: AAATTGTGGTTCTAAAGCACAATGTATGGCGGGTGAAGGGTCTGATACAGgtaagtttta ... tgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccttaaacttatcatgtataatacaacttagtaatgaaatttttgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAGGAACCGTTGTATGCTAAGTTTCGTGTGCGGGAAGGTTTTAAGAGGCCCA
                                         tttttgt  CT-rich tract
                  tataatacaacttagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccaaatttcttcttttttggagaaaaaaaaagctagaccaaacattaccttaaacttatcatgtataatacaacttagtaatgaaatttttgtgtggcagATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTTAACAAGGAACCGTTGTATGCTAAGTTTCGTGTGCGGGAAGGTTTTAAGAGGCCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
ccaaatt
- - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat