Sequence
atgc intronic sequence ATGC exonic sequencegtaaagtgtttcggaactcattatcttattataaaagtgacaggcttgaaattctgatactaatcctacttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGCCCCTAGGTGCTCTGAAATCCCAGAACTTGTGGCACTTAAGAATATCTTT
Basic information
| species | Glycine max |
| transcript | GLYMA02G04900.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G04900.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os09g37510.1 (Oryza sativa), 3'ss of exon 3
-----------gtaaagtgtttcggaactcattatcttattataaaagtgacaggcttgaaattctg----atactaatccta----cttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGCCCCTAGGTGCTCTGAAATCCCAGAACTTGTGGCACTTAAGAATATCTTT
| || || || | ||| | | || | | || || ||| |||| || || | | || || |||||||| |||||||| ||||||||||| || || ||||| ||||| ||||| |||||||| ||| |||| ||||| | | || | |||
gtttgtactttggaacttgcttgtgttatcaattttgcatgttctgaa-aactgggttgtaattgtgtgctgtatcgctgtcaaaccttttctttagGGAATGCCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATTTTTGCCGCCCCAAGGTGCTCAGAACTCCCTGAACTCGGTCGGATCCGCGATCTTTTT
upper sequence: GLYMA02G04900.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G012413_T01 (Zea mays), 3'ss of exon 3
---------------gtaaagtgtttcggaactcattatcttattataaaagtgacaggcttgaaattctgatactaatcctacttgt--ttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGCCCCTAGGTGCTCTGAAATCCCAGAACTTGTGGCACTTAAG-AATATCTTT
| || | |||| ||| | || | |||| || | | | | || || | || |||| | |||||||||||||||||||| ||||||||||| || || |||||||||||||| || ||||||||||| |||| ||||||| | | | || | | || |||
gtttgtctttaactaccatcaccttcctaaacttatt-tgttctcataagtatggaaaa--taaggtcctaatcttgtgccaactttttattcagGGAATGTCCAGCAGACTTGAAAGAAGGTATCTGCAGTTTGATATTTGCAGCTCCAAGGTGCTCTGAGCTCCCTGAACTTG-GTCGCATACGTGACATTTTT
upper sequence: GLYMA02G04900.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0302g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtaaagtgtttcggaactcattatct-tattataaaagtgacaggcttgaaattctgatactaatcctac-ttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGCCCCTAGGTGCTCTGAAATCCCAGAACTTGTGGCACTTAAGAATATCTTT
||| || || | |||| |||| || | || || | | | |||||| | || | | || |||||| || ||||||||| |||||||||| || ||||||| |||||||||||||| |||||||| || || ||||| || ||||| || | ||| |||
-----gtgcttataaatgctgaatctctatttatgaactcgcaagcattagttactgatatagaccccatactcttccagGGATTGCCCAGCAGATCTGAAAGAAGGGATATCTAGCTTAATATTTGCAGCCCCAAGGTGCTCAGATATTCCAGAGCTATTGGCAATTCGGGATAATTTT
upper sequence: GLYMA02G04900.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s1235g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtaaagtgtttcggaactcattatct-tattataaaagtgacaggcttgaaattctgatactaatcctac-ttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGCCCCTAGGTGCTCTGAAATCCCAGAACTTGTGGCACTTAAGAATATCTTT
||| || || | |||| |||| || | ||| || | | | |||||| | || | | || |||||| || ||||||||| |||||||||| || ||||||| |||||||||||||| |||||||| || || ||||| || ||||| || | ||| |||
-----gtgcttataaatgctgaatctctatttatgaactcacaagcattagttactgatatagaccccatactcttccagGGATTGCCCAGCAGATCTGAAAGAAGGGATATCTAGCTTAATATTTGCAGCCCCAAGGTGCTCAGATATTCCAGAGCTATTGGCAATTCGGGATAATTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26268960|gb|CA820023.1|CA820023EST: CTCTTCTGTGAATTAGTGGTGGCCAGGCTCGCAATCATTTCAAAGCAAAA GGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGC
genomic: CTCTTCTGTGAATTAGTGGTGGCCAGGCTCGCAATCATTTCAAAGCAAAAgtaaagtgtt ... cttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttattataaaagtgacaggcttgaaattctgatactaatcctacttgtttcagGGAATGTCCAGCAGATTTGAAAGAAGGAATTGCTAGCTTGATATTTGCAGCCCCTAGGTGCTCTGAAATCCCAGAACTTGTGGCACTTAAGAATATCTTT
tactaat putative branch site (score: 1)
tcctactt CT-rich tract
ttataaaagt TA-rich tract
