1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgggaataaatgattattgagatttgagaaaaattattctttgtactcaaattacttcttgtgcttgactaccacaaacaatgcatgccaattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAAATGTCGGTAGTGATAAAATAAGGGAACAAAAGAAAGCCAATCCAGTGGC
species | Glycine max |
transcript | GLYMA02G04780.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAG GTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAAEST: gi|4313507|gb|AI460626.1|AI460626
genomic: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGgtacagttgt ... aattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAA
EST: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAG GTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAAEST: gi|31307171|gb|CD392374.1|CD392374
genomic: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGgtacagttgt ... aattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAA
EST: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAG GTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAAEST: gi|12774307|gb|BG239234.1|BG239234
genomic: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGgtacagttgt ... aattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAA
EST: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAG GTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAAEST: gi|15285790|gb|BI469681.1|BI469681
genomic: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGgtacagttgt ... aattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAA
EST: TGCAAACACTGCAGCANGCATTGCTGGAGGCACTGGAGTCATGCCAGGAG GTAATGTTGGGGCTGAGCACGCTGTGTTTGA
genomic: TGCAAACACTGCAGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGgtacagttgt ... aattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGA
actcaaattacttcttgtgcttgactaccacaaacaatgcatgccaattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAAATGTCGGTAGTGATAAAATAAGGGAACAAAAGAAAGCCAATCCAGTGGC
gcttgac putative branch site (score: 4)
aattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggaataaatgattattgagatttgagaaaaattattctttgtactcaaattacttcttgtgcttgactaccacaaacaatgcatgccaattttgcagGTAATGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGTGCATCAGCGGGAAATGTCGGTAGTGATAAAATAAGGGAACAAAAGAAAGCCAATCCAGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -ggaataaa
- - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgcc