1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgaattatatcaatcttatttcatatgtttgtttgttgattgtggaatcagacaatagaattgactaaatgttgtcttatatttctttgattttaacagAAGGGCAAGATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGGTAGTTT
species | Glycine max |
transcript | GLYMA02G04110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGG AAGGGCAAGATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|298179739|gb|HO024954.1|HO024954
genomic: CGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGGgtaatatttt ... attttaacagAAGGGCAAGATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGG AAGGGCAAGATAAAGCCTGTTCATEST: gi|17963762|gb|BM270507.1|BM270507
genomic: CGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGGgtaatatttt ... attttaacagAAGGGCAAGATAAAGCCTGTTCAT
EST: CGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGG AAGGGCAAGATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CGATGGAGCCTAATGAAGGCACTTTTATTCTTCACAATGAGAAAACCAGGgtaatatttt ... attttaacagAAGGGCAAGATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
gaatcagacaatagaattgactaaatgttgtcttatatttctttgattttaacagAAGGGCAAGATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGGTAGTTT
tcttatatttctttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaattatatcaatcttatttcatatgtttgtttgttgattgtggaatcagacaatagaattgactaaatgttgtcttatatttctttgattttaacagAAGGGCAAGATAAAGCCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGCTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGGGTAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - catatgt
- - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - gattgtg