1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtgttgtggtgtggttccttcttctcatgcgggacccttagcacctggtacgcgttttggtttctgtgaaatgtaacagtttctgtttttttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACGGCGGAGCTTGATGCCGCCGGTTCGAAGCCGTTTAACCCGGAGGAGAGG
species | Glycine max |
transcript | GLYMA02G03990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG TGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACEST: gi|298175511|gb|HO018222.1|HO018222
genomic: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAGgtaattcaga ... tttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG TGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACEST: gi|298195403|gb|HO039234.1|HO039234
genomic: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAGgtaattcaga ... tttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG TGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACEST: gi|20449478|gb|BQ253602.1|BQ253602
genomic: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAGgtaattcaga ... tttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG TGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACEST: gi|23064138|gb|BU578911.1|BU578911
genomic: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAGgtaattcaga ... tttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGA-CAAGCTTCTCAG TGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACEST: gi|13480785|gb|BG510128.1|BG510128
genomic: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAGgtaattcaga ... tttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG TGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACEST: gi|192312289|gb|FK005293.1|FK005293
genomic: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAGgtaattcaga ... tttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
EST: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAG TGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
genomic: GCAGGAGAATCATACGAGGAAGCCATCGCGAGTCTGACCAAGCTTCTCAGgtaattcaga ... tttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGAC
ctggtacgcgttttggtttctgtgaaatgtaacagtttctgtttttttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACGGCGGAGCTTGATGCCGCCGGTTCGAAGCCGTTTAACCCGGAGGAGAGG
atgtaac putative branch site (score: 3)
tttctgtttttttatt putative PPT
tttctgtttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgttgtggtgtggttccttcttctcatgcgggacccttagcacctggtacgcgttttggtttctgtgaaatgtaacagtttctgtttttttattgtagTGAAAAAGCTGACCTCGGTGGTGTTGCCGCCGCAAAGATCAAGGATCTGACGGCGGAGCTTGATGCCGCCGGTTCGAAGCCGTTTAACCCGGAGGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG