1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgctgcagcatttgtgtggactcattgttcagtcattcagtgtctttagcattaggctataaactttttaatgggtggtgttaattttgctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
species | Glycine max |
transcript | GLYMA02G02330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAG GTGCTGGCAAAGTCCTCCAAAATGATTCCAGEST: gi|192298869|gb|FG987614.1|FG987614
genomic: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcatttc ... ctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
EST: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAG GTGCTGGCAAAGTCCTCCAAAATGATTCCAGEST: gi|209721388|gb|BW654584.1|BW654584
genomic: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcatttc ... ctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
EST: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAG GTGCTGGCAAAGTCCTCCAAAATGATTCCAGEST: gi|192304303|gb|FG996443.1|FG996443
genomic: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcatttc ... ctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
EST: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAG GTGCTGGCAAAGTCCTCCAAAATGATTCCAGEST: gi|213615395|gb|DB965495.1|DB965495
genomic: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcatttc ... ctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
EST: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAG GTGCTGGCAAAGTCCTCCAAAATGATTCCAGEST: gi|151411658|gb|EV281469.1|EV281469
genomic: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcatttc ... ctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
EST: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAG GTGCTGGCAAAGTCCTCCAAAATGATTCCAG
genomic: GTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcatttc ... ctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
tttagcattaggctataaactttttaatgggtggtgttaattttgctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
tgttaat putative branch site (score: 3)
ttttgct CT-rich tract
tataaactttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctgcagcatttgtgtggactcattgttcagtcattcagtgtctttagcattaggctataaactttttaatgggtggtgttaattttgctacttgcagGTGCTGGCAAAGTCCTCCAAAATGATTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
atgctgc
- - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - -tcattca
- - - - - - - - - - - - - - - - - - - - gtgtctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtggt