Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccttatgttcattttttggtaattacttttacttggtgcaaattggtcccaactaaatcttaaagagtgtattttgtttctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAG

Basic information

species Glycine max
transcript GLYMA02G01990.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01990.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 3
------------------------gtaagccttatgttcattttttggtaattacttttacttggtgcaaattggtcccaa-----ctaaatcttaaagagtgtattttgttt------------ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAG
                          |  |   |      |||| |   ||  |   |  ||     || |||  |    |     | | ||| |  ||| |  ||||| |||            ||| ||  |||| || ||||||||||| | |||||| ||| | ||||||||||  ||||||   ||||||||||||||||| |||||||| ||||| ||||||
gtaagatttattccttatacttttaaatacagaaaaaatgttttgtaaaaacaatggtatctcaacacagatttattttcagcccccaatatccttgagacttgatttttttttttttaatctttctgggtacagGTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298776|gb|FG988627.1|FG988627
EST:     GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGG                         GTTTTCCAGTTTGCTGATAAGTACAGGG-ATCCTACAGCAATGCCTTGAAA
genomic: GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGgtaagcctta ... ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
EST: gi|193640162|gb|FK592715.1|FK592715
EST:     GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGG                         GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
genomic: GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGgtaagcctta ... ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
EST: gi|208293521|gb|GE093481.1|GE093481
EST:     GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGG                         GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
genomic: GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGgtaagcctta ... ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
EST: gi|193719953|gb|FK650449.1|FK650449
EST:     GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGG                         GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGTAA
genomic: GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGgtaagcctta ... ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTG-AA
EST: gi|208058996|gb|GD859000.1|GD859000
EST:     GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGG                         GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
genomic: GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGgtaagcctta ... ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
EST: gi|193547608|gb|FK504569.1|FK504569
EST:     GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGG                         GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
genomic: GAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGgtaagcctta ... ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
EST: gi|193359668|gb|FK323752.1|FK323752
EST:     AAGAAGTGACCCCAACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGG                         GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA
genomic: AAGAAGTGACCCC-ACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGgtaagcctta ... ctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgcaaattggtcccaactaaatcttaaagagtgtattttgtttctgagtgtagGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAG
                aactaaa  putative branch site (score: 2)
                                     ttttgtttct  putative PPT
                aactaaatcttaaa  TA-rich tract