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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtttgtgatatcttatatttgttacctggacaatcaatttgtctgtttgcatttgcatggttacttatgcatggttattgcgatgcaacattttcatgattgcagACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG

Basic information

species Glycine max
transcript GLYMA02G01220.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208319851|gb|GE114614.1|GE114614
EST:     GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG                         ACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGG
genomic: GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGgtctgtttgt ... atgattgcagACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGG
EST: gi|193637987|gb|FK586223.1|FK586223
EST:     GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG                         ACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTA
genomic: GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGgtctgtttgt ... atgattgcagACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTA
EST: gi|120532325|gb|EH260458.1|EH260458
EST:     GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG                         ACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTA
genomic: GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGgtctgtttgt ... atgattgcagACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTA
EST: gi|193329498|gb|FK296064.1|FK296064
EST:     GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG                         ACAATAAGCTACATGG
genomic: GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGgtctgtttgt ... atgattgcagACAATAAGCTACATGG
EST: gi|193586534|gb|FK538560.1|FK538560
EST:     GACGTATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG                         ACAATAAGCTACATGG
genomic: GACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGgtctgtttgt ... atgattgcagACAATAAGCTACATGG
EST: gi|193551204|gb|FK507989.1|FK507989
EST:     TTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAG                         ACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTA
genomic: TTACTACCATTGGTGGTAAAAATGGCCAGCCAAAGCAGgtctgtttgt ... atgattgcagACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgcatggttacttatgcatggttattgcgatgcaacattttcatgattgcagACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG
                                        ttttcat  CT-rich tract
 ttacttat  TA-rich tract