Sequence
atgc intronic sequence ATGC exonic sequence...gttttttttcttcttgtttttaactgaaattcttcaagatgcaacgtgttttaaacctattcctttgtttcagtctaacaaataatgaatttggttgcagAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGC
Basic information
species | Glycine max |
transcript | GLYMA02G01060.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01060.3 (Glycine max), 3'ss of exon 3
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 3'ss of exon 3
gttttttttcttcttgtttttaactgaaattcttcaagatg--caacgtgttttaaacctattcctttgtttcagtctaacaaataatgaatttggtt--gcagAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGC
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---gtatgtctcttttctctgaactt--ctttgtcaatgtaatcagcatcttctttgctcgttg-tgtgttatagatgctttacgcatgtggttactttgacagAGAATATGACACCTGAACAAAGAAAGGAAAATTATTTATGCGATATCACATATGTCACCAACAGTGAGCTTGGATTTGATTATCTGAGAGACAATCTAGC
upper sequence: GLYMA02G01060.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 3'ss of exon 3
-gttttttttcttcttgtttttaactgaaattcttcaagatgcaacg-tgttttaaacctattcctttgtttcagtctaacaaat-aatgaatttggttgcagAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGC
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ggattggtccttttaagtctataagttctgcttctaagtattagttgatgagttaacgttatgactggaatata---taacaatttgatgtttatactggcagAGAATATGACAAGTGAACAAAGGAGGGAAAATTACTTATGTGACATCACATATGTCACAAACAGTGAGCTTGGTTTTGATTTCTTGAGAGACAATCTTGC
upper sequence: GLYMA02G01060.3 (Glycine max), 3'ss of exon 3
lower sequence: EFJ08380 (Selaginella moellendorffii), 3'ss of exon 3
gttttttttcttcttgtttttaactgaaattcttcaagatgcaacgtgttttaaacctattcctttgtttcagtctaacaaataatgaatttggttgcagAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGC
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--------------------------------------gtaggtaatggtgtatacaaactacattgcgttg--ctaatgtttgcagcattt---ttcagAGGGAATGGATAGTGCGGAGCGAAGAACAAACTACGGCTCTGATATAACTTATGTTACGAACAGTGAGCTCGGCTTTGATTACTTGAGGGACAATTTGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttttaaacctattcctttgtttcagtctaacaaataatgaatttggttgcagAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGC
gtctaac putative branch site (score: 2)
taacaaataatgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttttttcttcttgtttttaactgaaattcttcaagatgcaacgtgttttaaacctattcctttgtttcagtctaacaaataatgaatttggttgcagAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT