1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttttccctttatcttaaacatgcgtgcatttttttacctgtagttcaattaaactctctcctcctgtaggctgcaattacgtatactctatactcaagtctgtgttctgtcatttttttgtatgtaatcttccatgtacagATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTTTCAGTGGAGATAGTGAAGATGAG
species | Glycine max |
transcript | GLYMA02G00930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTG ATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTTEST: gi|19935747|gb|BQ080568.1|BQ080568
genomic: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTGgtttttccct ... ccatgtacagATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTT
EST: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTG ATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTTEST: gi|19935590|gb|BQ080504.1|BQ080504
genomic: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTGgtttttccct ... ccatgtacagATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTT
EST: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTG ATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTTEST: gi|10843959|gb|BF070872.1|BF070872
genomic: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTGgtttttccct ... ccatgtacagATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTT
EST: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTG ATTTCTTTAACTGGAATAGAAGTCAAATTACGGTACTGTGATGGGGCGTCT
genomic: TCAAATACCATTCACGGGAATATTGAGCAACAAACCTGAAGAAAACCCTGgtttttccct ... ccatgtacagATTTCTTTAACTGGAATAGA-GTTAAATTACGGTACTGTGATGGGGCGTCT
tctatactcaagtctgtgttctgtcatttttttgtatgtaatcttccatgtacagATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTTTCAGTGGAGATAGTGAAGATGAG
tcttccat CT-rich tract
atttttttgtatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttccctttatcttaaacatgcgtgcatttttttacctgtagttcaattaaactctctcctcctgtaggctgcaattacgtatactctatactcaagtctgtgttctgtcatttttttgtatgtaatcttccatgtacagATTTCTTTAACTGGAATAGAGTTAAATTACGGTACTGTGATGGGGCGTCTTTCAGTGGAGATAGTGAAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG