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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgttttctgttgatcttccttactctatctctttcattaggtgtttatttttagtggtttgtaatttctgaggtgttttcttttcctggaggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT

Basic information

species Glycine max
transcript GLYMA02G00750.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590906|gb|DB973717.1|DB973717
EST:     CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGgttatattct ... aggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
EST: gi|19347696|gb|BM892484.1|BM892484
EST:     CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGT
genomic: CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGgttatattct ... aggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGT
EST: gi|6566941|gb|AW234572.1|AW234572
EST:     CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGgttatattct ... aggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
EST: gi|193410737|gb|FK375898.1|FK375898
EST:     CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTC
genomic: CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGgttatattct ... aggattgcagTTTCTTAAACAGTC
EST: gi|254328397|gb|GR835362.1|GR835362
EST:     CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGgttatattct ... aggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
EST: gi|208218769|gb|GE017081.1|GE017081
EST:     CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGAT
genomic: CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGgttatattct ... aggattgcagTTTCTTAAACAGTCTGCATCAGAT
EST: gi|192301309|gb|FG989014.1|FG989014
EST:     CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAG                         TTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA
genomic: CATTTATTCTACAGCTACTAGGTCTCAATAGCTCCAACAGTGGGAAAGAGgttatattct ... aggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttagtggtttgtaatttctgaggtgttttcttttcctggaggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT
             tttgtaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgttttctgttgatcttccttactctatctctttcattaggtgtttatttttagtggtttgtaatttctgaggtgttttcttttcctggaggattgcagTTTCTTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT

- - - tctgttg
- - - - - - - -cttcctt
- - - - - - - - - - - - - - - - - - - - ggtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgag