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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactcctgaatgaactcaagtcattgatccagAATTTGCATTCTATGGACCAATGGGTTTTGACATGGGTGCATTCTTGGGAAACCTCATCTTGGCTTTCTATGCTCAGGACGGACTTGTTCATCAACCCAA

Basic information

species Glycine max
transcript GLYMA01G45520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45520.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G464137_T03 (Zea mays), 3'ss of exon 3
gttact-cctgaatgaactcaagtcattgatc--cagAATTTGCATTCTAT-----GGACCAATGGGTTTTGACA-----TGGGTGCA---TTCTTGGGAAACCTCA--TCTTGGCTTTCTATG--CTCAGGACGGACTTGTTCAT--CAACCCAA---------------------------------
|| | | ||| | |||| | || | | ||  |  | |  |||   |||| |     |||    ||  ||||             ||||   || | | || | ||||     ||  |      |  |||   || |  |   ||||    ||| ||                                 
gtaattacctcactgaattgaaattagtggccacctgtgttttgtttctgtacatgggaattgtgactttttttggtttccaactgcagGTTTATCGAGAGAGCTCAAGCTCTGATTCATGGAGATCTCCACACTGGTTCTATCATGGTGACCGAAGGTTCAACTCAAGTCATTGATCCAGAATTTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttactcctgaatgaactcaagtcattgatccagAATTTGCATTCTATGGACCAATGGGTTTTGACATGGGTGCATTCTTGGGAAACCTCATCTTGGCTTTCTATGCTCAGGACGGACTTGTTCATCAACCCAA
                                            cattgat  putative branch site (score: 4)