Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT

Basic information

species Glycine max
transcript GLYMA01G44600.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02270.t01 (Vitis vinifera), 3'ss of exon 4
-----gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
                                                                                                    |||||||| ||||||||||||||||||||||||||  | ||||| || ||                                                
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTGATGGAGTTGAGATCCATGGGGCTCATGGCTAN-TACTTGACCAGTTC-----------------------------------------------

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02020.t01 (Vitis vinifera), 3'ss of exon 4
gtaatttcccccacc------ttttgctcctgccaaatactaatgtttcaaataccctgccaaatact--aacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
   ||| || |||        ||    |   | |  ||  |  |||     |   |    ||  | ||   |    ||| |  |   ||| |||  ||||||||||||||| || |||||||||||||||||||||||||| ||||| || || ||||||||  | || ||||| ||||| ||| ||||||||||||||||
-ccattcccaccattgaattattggattttagtcttatggttttgtgaatgaagtcacttcagtttctttgatgcaataacattacttgttcaatatgtagGTTTTGATGGAGTCGAGATCCATGGGGCTCATGGCTACCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACTGACAAATATGGTGGATCCCT

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02080.t01 (Vitis vinifera), 3'ss of exon 4
gtaatttcccccaccttt--tgctcctgccaaatactaa----tgtttcaaataccctgccaaatact-aacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
 || |   ||    | |   ||    | |||||||||||       || |  | |||| | |  |  |  |    ||| |  |   ||| |||  |||||| |||||||| ||||||||||||||||||||||||||||| ||||| || || ||||||||  | || || || ||||| ||  ||||||| ||||||||
ctattgaaccatttcgtggatgtaattcccaaatactaaaccgcacttgatttgcccttcaatttctttgatgcaataacattacttgttcaatatgtagGATTTGATGGAGTTGAGATCCATGGGGCTCATGGCTACCTACTTGACCAGTTCATGAAAGACCAGGTCAACGATCGAACTGATAAATATGGCGGATCCCT

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02010.t01 (Vitis vinifera), 3'ss of exon 4
gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
|||| |||  || |   |         ||   | |||  ||  |   |   |     || |    || |||    ||  |   |||  | ||||||||||||| |||||||||||||| ||||||||||| || ||||| || || ||||||||  | || ||||| ||||||||| | ||||||||||| | 
gtaaattcatcctctaatacaattaatcatgaattaactttctagtcaatttcttcgatgcactaatgataatattgtttacccaatatatagGTTTTGATGGAGTTGAGATCCATGGAGCTCATGGCTATCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACAGACAAGTATGGTGGATCACA

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02070.t01 (Vitis vinifera), 3'ss of exon 4
gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
|||| |||  || |   |         ||   | |||  ||  |   |   |     || |    || |||    ||  |   |||  | ||||||||||||| |||||||||||||||||||||||||| || ||||| || || ||||||||  | || ||||| ||||||||| | ||||||||||||||
gtaaattcatcctctaatacaattaatcatgaattaactttctagtcaatttcttcgatgcactgatgataatattgtttacccaatatatagGTTTTGATGGAGTTGAGATCCATGGGGCTCATGGCTATCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACAGACAAGTATGGTGGATCCCT

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02060.t01 (Vitis vinifera), 3'ss of exon 4
gtaatttcccccacc------ttttgctcctgccaaatactaatgtttcaaataccctgccaaatact--aacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
   ||| || |||        ||    |   | |  ||  |  |||     |   |    ||  | ||   |    ||| |  |   ||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||||||  | || ||||| ||||| ||| ||||||||||||||||
-ccattcccaccattgaattattggattttagtcttatggttttgtgaatgaagtcacttcagtttctttgatgcaataacattacttgttcaatatgtagGTTTTGATGGAGTTGAGATCCATGGGGCTCATGGCTACCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACTGACAAATATGGTGGATCCCT

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02050.t01 (Vitis vinifera), 3'ss of exon 3
gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
|||| |||  || |   |         ||   | |||  ||  |   |   |     || |    || |||    ||  |   |||  | ||||||||||||| |||||||||||||| ||||||||||| || ||||| || || ||||||||  | || ||||| ||||||||| | ||||||||||| ||
gtaaattcatcctctaatacaattaatcatgaattaactttctagtcaatttcttcgatgcactgatgataatattgtttacccaatatatagGTTTTGATGGAGTTGAGATCCATGGAGCTCATGGCTATCTACTTGACCAGTTCATGAAAGACCAGGTCAATGATCGAACAGACAAGTATGGTGGATCACT

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0041g02040.t01 (Vitis vinifera), 3'ss of exon 5
gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT---------------
|||| |||  ||   | |    |    ||     ||   ||  |   |   |     || |    || |||    ||  |   |||    ||||||||||||| |||||||||||||||||||||||||| || ||||| ||                || ||||| ||||||||| | |||||| |||| ||               
gtaaattcatcc---tctgatacaaatcatggcttagctttctagtcaatttcttcgatgcactgatgataatattgtttacacaatacatagGTTTTGATGGAGTTGAGATCCATGGGGCTCATGGCTATCTACTTGACCAG---------------GTCAATGATCGAACAGACAAGTATGGTAGATCACTAGAGAACCGTTGCAG

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ20558 (Selaginella moellendorffii), 3'ss of exon 4
gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatat-ccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
                                     ||||  |     | |      | |||   ||||   | |  |     |    |||||| |||||||| |||||||||||||||||||| ||||| ||| | || |||||  ||||| ||   || || ||  |||| || || |||||||| ||  |
------------------------------------gtgttaaactatgcttctttctttctagtttcatgggctaacgaaaaactgggtgtagGCTTTGATGGTGTTGAGATCCATGGGGCTCACGGCTATCTGATCGACCAATTCCTGAAAAATGGTGTCAACGATAGAACGGATGAGTATGGTGGTTCTTT

upper sequence: GLYMA01G44600.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ28624 (Selaginella moellendorffii), 3'ss of exon 4
gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatat-ccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
                                     ||||  |     | |      | |||   ||| |  | |  |     |    |||||| |||||||| ||||||||||| |||||||| ||||| ||| | || |||||  ||||||||   || || ||  |||| || || || ||||| || ||
------------------------------------gtgttaaactatgcttctttctttctagtttcacaggctaacgaaaaactgggtgtagGCTTTGATGGTGTTGAGATCCACGGGGCTCACGGCTATCTGATCGACCAATTCCTGAAAGATGGTGTCAACGATAGAACGGATGAGTACGGTGGTTCTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023060|gb|CX709801.1|CX709801
EST:     AAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTGGAGATCCATGGGGCTCATGGCTACCTGC-TGAGCAAA
genomic: AAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGC-AA
EST: gi|6724334|gb|AW308733.1|AW308733
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGTGGTTGACATCTCATGGG-CTCATAGCTACCTGCTT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATC-CATGGGGCTCATGGCTACCTGCTT
EST: gi|19937188|gb|BQ081188.1|BQ081188
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCCAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|21637821|gb|BM107976.1|BM107976
EST:     CATATTGTAAATGACTTCAGACTTGCTGCAAGGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGANATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: CATATTGTAAATGACTTCAGACTTGCTGCAAGG-AATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|298197029|gb|HO041716.1|HO041716
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCT
EST: gi|192297056|gb|FG990327.1|FG990327
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|254345565|gb|GR851727.1|GR851727
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|7588905|gb|AW704690.1|AW704690
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|192295796|gb|FG990862.1|FG990862
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|33388659|gb|CA851866.1|CA851866
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|298196403|gb|HO041146.1|HO041146
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGG
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGG
EST: gi|15814078|gb|BI786353.1|BI786353
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTG
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTG
EST: gi|33390375|gb|CA853570.1|CA853570
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|7926222|gb|AW832248.1|AW832248
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|8284685|gb|BE022227.1|BE022227
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTNTGATGGGGTTGAGATCCATGGNGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|19935988|gb|BQ080671.1|BQ080671
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|7638963|gb|AW733295.1|AW733295
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|8282576|gb|BE020137.1|BE020137
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|15815611|gb|BI787886.1|BI787886
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCNAAGCTG                         GTTTTGATGGGGTTGAG
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAG
EST: gi|17153052|gb|BM142985.1|BM142985
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|19938439|gb|BQ081720.1|BQ081720
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|192322649|gb|FK014986.1|FK014986
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|192324298|gb|FK018274.1|FK018274
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCACGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|14991432|gb|BI317105.1|BI317105
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|14989963|gb|BI315636.1|BI315636
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAAATCCATGGGGCTCATGGC
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGC
EST: gi|18732748|gb|BM527225.1|BM527225
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|163923188|gb|EH039639.1|EH039639
EST:     CTGC-AGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: CTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|13562991|gb|BG551211.1|BG551211
EST:     GCATATTGTAATTGTCTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|15203493|gb|BI426261.1|BI426261
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|7925485|gb|AW831511.1|AW831511
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|17400292|gb|BM177074.1|BM177074
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCCAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|254319835|gb|GR830859.1|GR830859
EST:     GCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|15815436|gb|BI787711.1|BI787711
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCCTTGAGCA-
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGC-TTGAGCAA
EST: gi|37997291|gb|CF808880.1|CF808880
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|19936789|gb|BQ081013.1|BQ081013
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
EST: gi|14258930|gb|BG881829.1|BG881829
EST:     GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTG                         GTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT
genomic: GCATATTGTAAATGACTTCAGACTTGCTGCAAGGAATGCCATCGAAGCTGgtaatttccc ... caaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT
                    tactaac  putative branch site (score: 0)
                 aaatactaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttcccccaccttttgctcctgccaaatactaatgtttcaaataccctgccaaatactaacatcatatccatggctgtgcaaattgtagGTTTTGATGGGGTTGAGATCCATGGGGCTCATGGCTACCTGCTTGAGCAATTTATGAAAGATAAAGTGAATGACCGAACAGACGAATATGGTGGATCCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA