1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatgcatcatgttttaattggtttctgtatcttactattcctaaactaatactattgtgactaatttattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTT
species | Glycine max |
transcript | GLYMA01G43700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA GAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGEST: gi|7042736|gb|AW472630.1|AW472630
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA GAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGEST: gi|15202990|gb|BI425758.1|BI425758
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA GAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGEST: gi|193678221|gb|FK618415.1|FK618415
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA GAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGEST: gi|6915919|gb|AW397449.1|AW397449
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA GAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGEST: gi|7146570|gb|AW508492.1|AW508492
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA GAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGEST: gi|193717452|gb|FK651646.1|FK651646
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
EST: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAA GAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
genomic: TCACGTGTACTTGTCAAGCCCTACAAGGAGAAGGGAAAAGTCCCTGACAAgtaagtatgc ... tattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATG
tttctgtatcttactattcctaaactaatactattgtgactaatttattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTT
gactaat putative branch site (score: 2)
taaactaatactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatgcatcatgttttaattggtttctgtatcttactattcctaaactaatactattgtgactaatttattatgcagGAGACAACAACAGCAACAACAGCAATTAGAGAGGGGAGATCTTTCACCATGTTTAAGCCCCTCTGGCTTTGGCTCTAAAGAACCTTATGATTTCCATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC