1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atagaaatgaagaacctattcaagttgcacttggtccttcagtagcagtgtgcaaatataatagccatgttttattaagaacagaactgcttgttgtcagGTAGGAAGAGATGTTGCAACATGTTTGCAAGAAGCATTGGCACGGAAAGGCCTAGATGTGCGGGTAGCTGCATTG
species | Glycine max |
transcript | GLYMA01G43650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATG GTAGGAAGAGATGTTGCAACAEST: gi|23061491|gb|BU578462.1|BU578462
genomic: CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATGgttagtcgga ... ttgttgtcagGTAGGAAGAGATGTTGCAACA
EST: CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATG GTAGGAAGAGATGTTGCAACA
genomic: CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATGgttagtcgga ... ttgttgtcagGTAGGAAGAGATGTTGCAACA
cagtgtgcaaatataatagccatgttttattaagaacagaactgcttgttgtcagGTAGGAAGAGATGTTGCAACATGTTTGCAAGAAGCATTGGCACGGAAAGGCCTAGATGTGCGGGTAGCTGCATTG
atgttttattaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagaaatgaagaacctattcaagttgcacttggtccttcagtagcagtgtgcaaatataatagccatgttttattaagaacagaactgcttgttgtcagGTAGGAAGAGATGTTGCAACATGTTTGCAAGAAGCATTGGCACGGAAAGGCCTAGATGTGCGGGTAGCTGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -aatgaag
- - - - - - - -ctattca
- - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - tccttca
- - - - - - - - - - - - - - - - - - - - - - - -gtgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaac