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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacaccttgaagtgtcttgtgaggttgattataccttctacagctttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA

Basic information

species Glycine max
transcript GLYMA01G43540.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43540.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G64440.1 (Arabidopsis thaliana), 3'ss of exon 3
-----aacaccttgaagtgtcttgtg-aggttgattataccttctacagctttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
     | | ||||   || | |  || || ||  |  ||     ||    | |||   |           || | | | |  || | | | |||||      |||||| || ||||| || || || ||||| ||||| ||||||||||||||||| || ||||||||||  || ||||| | |||||  || |||||||| || |
gtaaaatccccttttggtctgtattgcagatttttggtattccttatgtatgtgagtatgtgacagtgaaacatgatttaactt-tctctcattgatctcaatcagCTTGTATTTTCTTCGTCCGCTACTGTGTATGGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTATGGACGGACAA

upper sequence: GLYMA01G43540.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G10960.1 (Arabidopsis thaliana), 3'ss of exon 3
aacaccttgaagtgtcttgtgaggttg-attataccttctacagctttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
         | || |  | ||    |  |  | |  ||| |   | ||    ||    |      |      |||||   || ||  |    || || ||||| ||||||||||| ||||||||||| ||||| |  ||||| || ||||| || ||||| ||||| ||  | || ||  ||||||||||||||||||| |
-------gtatgtataatttgccactacacaacaagttcgaatccatttttactttgcttgatcaattctcatgattagctacttt-tactctgtttccagCTTGTGTTTTCATCATCAGCAACTGTGTATGGCTCTCCAAAAGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGACGAACAA

upper sequence: GLYMA01G43540.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 3'ss of exon 3
----------aacaccttgaagtgtcttgtgaggttgattataccttctacagctttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttc-agCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
            |  | |      | || | |     |  | |     | |   ||||| | |    |    | | |||| |   || |  |||| |    || |||| |||| || |||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||  ||  | || || |  ||||||||||| || || |
gtaatttttttccttcctctctctttttctaattgccaccacatgcattccctttttga-gtttgtcttgtttgatctcatta--ttggcttttactactctgttttccagCTTGTATTTTCATCATCAGCTACTGTCTATGGCTGGCCTAAGGAGGTTCCTTGCACTGAGGAGTCACCAATTTCTGCCACTAACCCATATGGCCGTACAA

upper sequence: GLYMA01G43540.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 3'ss of exon 3
aacaccttgaagtgtctt-gtgaggttgattataccttctacagctt---tgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
  |    |    ||| ||    | |||  || |    | ||| | ||   ||   |||  |||   |  |  |||||| ||   | ||   | ||  ||||||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |  ||||  || ||||||||||||||||
tcctttattttttgtttttaccacgtttcttgtgatat-tactgtttatgtgcaactctgttctaatgtctccactgacttctaaatt--ctcaac-atttcagCTTGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCACTATGTGCAACAAATCCATATGGACGAACTA

upper sequence: GLYMA01G43540.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 3'ss of exon 3
-aacaccttgaagtgtcttgtgaggttgattataccttctacagctttgacgc---tccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
  |  | |     | | ||   | |||  || |    | ||| | ||  | ||   ||  ||||  |  | ||||||||||   ||||   | ||| ||||||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |  ||    || |||||||||||||| |
agatgcatgccttttttttagcatgtttcttgtgatgt-tactgtttatatgcaactctgttcaaatgtcttcactgatttctaattt--ctcaat-atttcagCTTGTTTTTTCATCATCAGCTACTGTTTATGGTTGGCCAAAGGAGGTTCCATGTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713128|gb|BW653837.1|BW653837
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: gi|192333229|gb|FK026110.1|FK026110
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATACAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCC
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCC
EST: gi|15000492|gb|BI321306.1|BI321306
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: gi|12489618|gb|BG043139.1|BG043139
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: gi|15813402|gb|BI785677.1|BI785677
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCA
EST: gi|151398432|gb|EV268303.1|EV268303
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCGTGGATGCAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: gi|14991639|gb|BI317312.1|BI317312
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: gi|209699775|gb|BW652120.1|BW652120
EST:     CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG                         CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
                            attttgtatttaattg  TA-rich tract