1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacaccttgaagtgtcttgtgaggttgattataccttctacagctttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
species | Glycine max |
transcript | GLYMA01G43540.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCAEST: gi|192299883|gb|FG990091.1|FG990091
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: CACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCAEST: gi|192333229|gb|FK026110.1|FK026110
genomic: CACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATACAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCEST: gi|15000492|gb|BI321306.1|BI321306
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCC
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCAEST: gi|15813402|gb|BI785677.1|BI785677
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAEST: gi|151398432|gb|EV268303.1|EV268303
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCA
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCGTGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCAEST: gi|12489618|gb|BG043139.1|BG043139
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCAEST: gi|14991639|gb|BI317312.1|BI317312
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCAEST: gi|209699775|gb|BW652120.1|BW652120
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
EST: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAG CTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
genomic: CTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGgtaaaatcct ... atgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCA
ttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
attttgtatttaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaccttgaagtgtcttgtgaggttgattataccttctacagctttgacgctccattcagctcacctcactgattttgtatttaattgaatgatttcagCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTA
- caccttg
- - - - - - tgtcttg
- - - - - - - - - - gaggttg
- - - - - - - - - - - - - - - - -ccttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcact