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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatattggactgaaggaaaaatatatttgtgaactgtgatgtatcaatctctcctaatctttttttactttgatttttttattatcttgctatacctcagATTCCCAAAGATGATGAAGGAGAGCCAACGTATGAGGAATTCATATGTAAGGCATGCTCTCACGTATGCTTCTTTCTAAAGTTATATCCCGAAAAAATAT

Basic information

species Glycine max
transcript GLYMA01G43520.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153540|gb|BM143473.1|BM143473
EST:     CTTCTGCGGAG                         ATTCCCAAAGATGATGAAGGAGAGCCAACGTATGAGGAATTCATATGTAAG
genomic: CTTCTGCGGAGgttggtattt ... tatacctcagATTCCCAAAGATGATGAAGGAGAGCCAACGTATGAGGAATTCATATGTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctctcctaatctttttttactttgatttttttattatcttgctatacctcagATTCCCAAAGATGATGAAGGAGAGCCAACGTATGAGGAATTCATATGTAAGGCATGCTCTCACGTATGCTTCTTTCTAAAGTTATATCCCGAAAAAATAT
                                       tcttgct  CT-rich tract
         taatctttttttactt  TA-rich tract