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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttactcactcgtgaatatgtttatcttgtcttgtagGTGGACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCTGTGATAGTGAGAACAGAACTATTGACAAAAATGGTGCTCCAGGAGTTCT

Basic information

species Glycine max
transcript GLYMA01G42790.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42790.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 3
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatttactcactcgtgaatatgtttatcttgtcttgtagGTGGACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCTGTGATAGTGAGAACAGAACTATTGACAAAAATGGTGCTCCAGGAGTTCT
                                                             | | |      |  |      | | || |  ||||||||||||| ||||| || ||||| ||||| ||||| |||||||||||||| || ||  | || || |||   || |||| ||| ||||| || || || ||||
ttgtaataagtactgctgccaacagtttattcaaacaataagactggttttgccttgttggtgtatcaaagataatcttggagctgatttgatcttgtagGTGGATTGCATCGTGTTTGACAAGACAGGTACCCTCACTGTTGGGAAGCCAGTAGTTGTTAGCACAAGGCTCTTGAAAAACATGGTACTTCAAGAATTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729122|gb|BU762645.1|BU762645
EST:     CTCAGGGTGTGCTCATCAAAGGAGGCCAAGCATTAGAGAGTGCACATAAG                         GTGGACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCT
genomic: CTCAGGGTGTGCTCATCAAAGGAGGCCAAGCATTAGAGAGTGCACATAAGgtcagcattt ... tgtcttgtagGTGGACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

nnnnnnnnnnnnnnnntatttactcactcgtgaatatgtttatcttgtcttgtagGTGGACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCTGTGATAGTGAGAACAGAACTATTGACAAAAATGGTGCTCCAGGAGTTCT
                    tactcac  putative branch site (score: 1)
                                          tcttgtctt  putative PPT
                                aatatgtttatctt  TA-rich tract