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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgtgcctgttaggaattttttattattttctaatgcatcatcattccattattggatgcattcaattttggggtgtttttttgtcatgttaatgcagGGTTTCATCACAAATAATGAGAGGGCATTAGAGGAGCTGTTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTTATGGCAAAACGGA

Basic information

species Glycine max
transcript GLYMA01G42140.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42140.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 7
aattgtgcctg--ttaggaattttttattattttctaatgcatcatcattccattatt--ggatgcattcaattt-tggggtgtttttttgtcatgttaatgcagGGTTTCATCACAAATAATGAGAGGGCATTAGAGGAGCTGTTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTTATGGCAAAACGGA
    ||   ||  |||  |   | ||     ||  | |||    |   |   | |||     || | || | ||| |    | |||   | || | |  ||  |||||||  ||||  || |||||||||| |||||||| || ||||||||||| ||||||  ||  | ||||| | | ||||||||||| ||||| |  || |
----gtatttggtttaaaaggctattgaacattagtcatgtggtaaactggaaatatctaaaattcctttagtttatcttatctttaaatttcttttccata-agGGTTTTGTCACTGATGATGAGAGGGCTTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccattattggatgcattcaattttggggtgtttttttgtcatgttaatgcagGGTTTCATCACAAATAATGAGAGGGCATTAGAGGAGCTGTTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTTATGGCAAAACGGA
                                            tgttaat  putative branch site (score: 3)
                 attcaatttt  TA-rich tract