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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataggtcagaaggatttgctgtgttgaaggtattgtccgtgttgactatttctaacttgtgttgttttacatgtcttcagGCTGAGATTGTTTGTGAAAAG

Basic information

species Glycine max
transcript GLYMA01G41570.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163157|gb|HO011890.1|HO011890
EST:     AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAG                         GCTGAGATTGTTTGTGAAAAG
genomic: AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAGgtaataggtc ... atgtcttcagGCTGAGATTGTTTGTGAAAAG
EST: gi|24136207|gb|BU926717.1|BU926717
EST:     AGGTTGGAAATGGATCATGGTACTCATGGTTTGAGCCTTTGAAAGAGCAG                         GCTGAGATTGTTTGTGAAAAG
genomic: AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAGgtaataggtc ... atgtcttcagGCTGAGATTGTTTGTGAAAAG
EST: gi|207751210|gb|GD726213.1|GD726213
EST:     AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAG                         GCTGAGATTGTTTGTGAAAAG
genomic: AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAGgtaataggtc ... atgtcttcagGCTGAGATTGTTTGTGAAAAG
EST: gi|213613400|gb|DB956914.1|DB956914
EST:     AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAG                         GCTGAGATTGTTTGTGAAAAG
genomic: AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAGgtaataggtc ... atgtcttcagGCTGAGATTGTTTGTGAAAAG
EST: gi|21285430|gb|BQ473301.1|BQ473301
EST:     AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAG                         GCTGAGATTGTTTGTGAAAAG
genomic: AGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAGgtaataggtc ... atgtcttcagGCTGAGATTGTTTGTGAAAAG
EST: gi|6071031|gb|AW100418.1|AW100418
EST:     GTTGGAAATGGATCATGGGATTTCATGGTTTTGACCCTTTGAAAGAGCAG                         GCTGAGATTGTTCGTGAAAAG
genomic: GTTGGAAATGGATCATGGGATT-CATGGTTT-GAGCCTTTGAAAGAGCAGgtaataggtc ... atgtcttcagGCTGAGATTGTTTGTGAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaggtattgtccgtgttgactatttctaacttgtgttgttttacatgtcttcagGCTGAGATTGTTTGTGAAAAG
                        ttctaac  putative branch site (score: 1)
                                              tgtcttc  putative PPT
                     tatttctaa  TA-rich tract