Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttatctctctacatgatttgaataatgtgttggcataagtgtctgttacgagctctgtcaagaaaacattatgataaatttgatatttttgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT

Basic information

species Glycine max
transcript GLYMA01G41100.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 3'ss of exon 3
gttatctct-----ctacatgatttgaataatgtgttggcata-agtgtctgttacgagctctgtcaagaaaacattatgataaatttgatatttttgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
 | || | |     | |  | ||||  |    || |||   || |    || || |     ||| |         ||    |||||||| | |   || ||||  ||| | ||| ||||| |||| ||| | || ||||| || || ||  |||| || || ||||||||||| || ||||| || ||||||||||||||||||||
atgatttttaatagcaatgtcatttttaattcgttttgcattataaaagctctttcctatcctgcctcc----tttttccttaaatttgttttacatgctgta--gGCAGACAGTCTTTCCTAAACACTTCAAAATGGATAGAGGAAGTTAGAACTGAGAGGGGCAGTGATGTTATCATTGTGCTGGTTGGGAACAAAACTGATCT

upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G075719_T02 (Zea mays), 3'ss of exon 3
---------------------------------------------------------gttatctc-tctacatgatttg-aataatgtgttggcataagtgtctgttacgagctctgtcaagaaaacattatgat---------aaatttgatatttttgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
                                                         | ||||   |  |||| | | | || ||||  | || |    | ||| ||| |   |  |   | |||   |||  ||         |  |||  |  |||  |  | ||||| ||||| |||||||||||||  | |||||||| || || || || || || || ||||||||||| || ||||| |||||||||||||||||||| ||
gtaatctctctctgtctctctcgcacacacaaacacacattctttaggaaaaaaaatggtatcagatgcacatcagtagcaacaatgactaggaagttttatcttttaaggattaaggacataaatttttactattttattcttacctttatttgtttcatgttgtagGCAGGCAGTCTTTCTTAAATACATCCAAGTGGATAGATGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCT

upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G169694_T01 (Zea mays), 3'ss of exon 3
-------------------------------------------gttatctctc-tacatgatttg-aataatgtgttggcataagtgtctgttacgagct----ctgtcaagaaaac--attatgataaatttg-----atatttttgttgtat-----agGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
                                           ||| ||   |  |||| | |   || ||||  | || |    | ||| |||   | |    |  | ||| | |   | | | |  | ||||     |  ||||||||  ||     |||| ||||| | |||||||||||  |||||||||| || || || || || || || ||||||||||| || ||||| |||||||||||||||||||| ||
gtaatctccctctctcatacacacacattctatagaaatagttgttgtcagacgcacatcagtaacaacaatgactaggaacttatatcttttaaaggtttaagcctttaaggacataaacttttactattttgttcttacctttttgtttcatgttgtagGCAGGCAGTCCTTCTTAAATACATCTAAGTGGATAGAGGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCT

upper sequence: GLYMA01G41100.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0021g00640.t01 (Vitis vinifera), 3'ss of exon 3
gttatctctctacatgatttgaataatgt---gttggcataagtgtctgttacgagctctgtcaagaaaacattatgataaatttgata--tttttgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
   || | |     | ||||    | ||      |    |  || | |||| |    |||||  |    |  || | |  | | ||  |  |||||||  | ||||| ||||| | ||| | || ||||| ||||||||||| ||||| || || ||  ||||||||||||| || ||||| ||||||||||||||||| || ||
-acatgttttggactaattttggcattggcaaactattttttgtatatgttgca---tctgt-gatgtgattttttaactactctggcacctttttgtgttttagGCAGGCAGTCATTCCTTAACACTGCCAAGTGGATTGAGGAGGTTCGTACTGAGCGAGGCAGTGATGTTATCATTGTCCTTGTTGGGAACAAAACAGACCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348135|gb|GR851814.1|GR851814
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|192322700|gb|FK014391.1|FK014391
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208092652|gb|GD888471.1|GD888471
EST:     TTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: TTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254315767|gb|GR825576.1|GR825576
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGA
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGA
EST: gi|207838928|gb|GD813418.1|GD813418
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTG
EST: gi|207696554|gb|GD678675.1|GD678675
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208037975|gb|GD835723.1|GD835723
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTG
EST: gi|193408283|gb|FK373645.1|FK373645
EST:     CATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: CATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193601113|gb|FK551700.1|FK551700
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208056039|gb|GD855468.1|GD855468
EST:     ACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: ACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193590328|gb|FK545356.1|FK545356
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207847632|gb|GD819231.1|GD819231
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208259931|gb|GE060227.1|GE060227
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAA-TACTGCTAAGTGGATTG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTG
EST: gi|193662854|gb|FK604846.1|FK604846
EST:     ACTCATCTGTGGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: ACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208095791|gb|GD894117.1|GD894117
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAAGGTAGCGAAC
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGA-GGT-GCGAAC
EST: gi|208148670|gb|GD951196.1|GD951196
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCGTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193379061|gb|FK344395.1|FK344395
EST:     ACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: ACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254345172|gb|GR851548.1|GR851548
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208170472|gb|GD969707.1|GD969707
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGCACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207761132|gb|GD733279.1|GD733279
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193363487|gb|FK330413.1|FK330413
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193443130|gb|FK405194.1|FK405194
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193477962|gb|FK440549.1|FK440549
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193678654|gb|FK615404.1|FK615404
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254322229|gb|GR837643.1|GR837643
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208140551|gb|GD938673.1|GD938673
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254348134|gb|GR851813.1|GR851813
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193306298|gb|FK271403.1|FK271403
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207694554|gb|GD678289.1|GD678289
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207770604|gb|GD745816.1|GD745816
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTTGGATTGAAGAGGTGCGAACA
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGT-GGATTGAAGAGGTGCGAACA
EST: gi|192322517|gb|FK014638.1|FK014638
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193452906|gb|FK420292.1|FK420292
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208278904|gb|GE078795.1|GE078795
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAG
EST: gi|254319917|gb|GR830941.1|GR830941
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207810289|gb|GD781091.1|GD781091
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCGTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207797755|gb|GD771567.1|GD771567
EST:     TATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: TATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208281690|gb|GE080656.1|GE080656
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193617486|gb|FK568852.1|FK568852
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACT
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACT
EST: gi|193446278|gb|FK413075.1|FK413075
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193333178|gb|FK298712.1|FK298712
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193627980|gb|FK573248.1|FK573248
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193449830|gb|FK413477.1|FK413477
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208166162|gb|GD963352.1|GD963352
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCCAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193342303|gb|FK307221.1|FK307221
EST:     AGGGACTCATCTTGTTAGCTGTTATTGTTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AGGGACTCATC-TG-TAGCTGTTATTG-TATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254345173|gb|GR851549.1|GR851549
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208275862|gb|GE074268.1|GE074268
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208299062|gb|GE100493.1|GE100493
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCGTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193327422|gb|FK293891.1|FK293891
EST:     AGCTACATCAGGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AGCTACATCA-GGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208306094|gb|GE104915.1|GE104915
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193372886|gb|FK333834.1|FK333834
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|207768880|gb|GD740131.1|GD740131
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATCGTGTATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|208146846|gb|GD945857.1|GD945857
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|254318145|gb|GR832313.1|GR832313
EST:     GGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: GGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193360233|gb|FK327635.1|FK327635
EST:     AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
EST: gi|193372631|gb|FK337905.1|FK337905
EST:     AAGTTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCGA                         GCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG
genomic: AAGCTACATCAGGGACTCATCTGTAGCTGTTATTGTATATGATGTTGCAAgtacgtcatt ... tgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacgagctctgtcaagaaaacattatgataaatttgatatttttgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT
                                 atttgat  putative branch site (score: 5)
                                         tttttgtt  CT-rich tract
                  aaaacattatgataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttatctctctacatgatttgaataatgtgttggcataagtgtctgttacgagctctgtcaagaaaacattatgataaatttgatatttttgttgtatagGCCGGCAGACTTTCTTAAATACTGCTAAGTGGATTGAAGAGGTGCGAACAGAAAGAGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -ctctaca
- - - - - - - tgatttg
- - - - - - - - - - - - - -gtgttgg
- - - - - - - - - - - - - - - - - - - -gtgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa