Sequence
atgc intronic sequence ATGC exonic sequencegtactcttcatttcttactttcctctttaattaaccaaaattgcttccttttttttttctttgattattattggtcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
Basic information
species | Glycine max |
transcript | GLYMA01G39420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g36050.1 (Oryza sativa), 3'ss of exon 2
-----------------------------------------gtactcttcatttcttactttcctctttaattaaccaaa--attgcttcct-tttttttttctttgattattattggtcc-----tgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
| | ||| || ||| ||| || | |||| | ||| || ||| | | | | ||| | | | ||| || ||||| ||||||||||| |||||||| || || ||||||||||| ||||| || ||||| || || ||||| ||||||| || | ||||||
gtacactacacacaccacgcaattgccaaatcgccgccttcttttttttctttcctttttttggctgttctcttaccagatcattcctacctacctactccgatcctaccatttcttgcctgtgatctcagGATACTTGTGTATGAGTACGTGGACAATGGCAACTTGGAGCAGTGGCTTCATGGCGACGTTGGACCGGTTAGCCCTCTGTCTTGGGACATCAGGATGAAC
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g34430.1 (Oryza sativa), 3'ss of exon 2
----------gtac-tcttcatttcttactttcctctttaattaaccaaaattgcttccttttttttttctttgattattat-tggtcctg--cagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
| | | |||| || | ||| || | | | ||| || | | | || | |||| ||| ||| ||| |||||||| |||||||| || ||||| || || ||||||||||||| |||||||| ||||| ||| || ||||| | ||||| | ||||
gtattttcttgcatgtgcacattatttggtaaccttgttgaattgcaaaatcaaaaggtttgataatgtaaatggtgtttatgtggctctgaccagGATGCTTGTGTATGAGTATGTCGACAACGGGAACCTAGAGCAGTGGCTCCATGGGGAAGTTGGACCTGTAAGCCCTCTTTCGTGGGATTCCAGGGTGAAG
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G040964_T01 (Zea mays), 3'ss of exon 2
------------------gtactcttcatttcttactttcctctttaattaac-caaaattgcttccttttttttttctttgattattattggtcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
|| | || || || | | | ||| | | ||| | | | | || |||| || || || | ||| |||||||| |||||||| ||||| ||||| || ||||| || |||||||| |||||||||||||| | || ||||| | ||||| | |||||
gtatgtcttgtcaggtgtgtgcaaaccacttgtt--tcgcttgtttggctgatacaatactaatgtagatgttggttctgtgtttcttgt--------cagGATGCTTGTATATGAGTATGTTGATAATGGGAACTTAGAACAATGGCTGCACGGGGATGTTGGGCCCAGAAGCCCTCTCGCCTGGGATGACAGGATGAAG
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G050861_T01 (Zea mays), 3'ss of exon 2
------------gtactcttcatttcttactttcctctttaatt-----aaccaa--aattgcttccttttttttttctttgattattattggtcc--------tgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
| | | | | ||| | | || | |||||| | || | |||| | | ||| ||| | |||| | | ||| |||||||| |||||||||||| | ||||| || || ||||| ||||| |||||||||||||| ||| || ||||| || ||||| || |||||||
gtatcttcttgtatggacaatagctttagcttatattgtgaaattatagaaccaaggagtttgtagctttatcataaatttcattgtatatggttcttttccattccagGATGCTTGTGTATGAGTACGTTAATAATGGAAACTTGGAGCAATGGCTCCATGGGGATGTTGGCCCTGTGAGCCCTCTTACATGGGATATCAGAATGAAG
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g00480.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------------------------------------------------------gtactcttcatttcttactttcctctttaa--ttaaccaaaattgcttccttttttttttctttgat----tattattggtcc-------tgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
|| | || | || || |||||| | ||| || || |||| | | |||| ||| ||| | | || || |||||||| |||||||| || | ||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| |||||||| |||||||||||
gtactttgttattgtctattgcttaatcctgcttgattgtatttgaactgcaaacaagaatatcttattaattccccattgaaaatgattttgtgttgtttaattttt-ttttcctggctggccttatacatgatatcttcaacagatatgctgatgatgtcctatccttgtttcaatctgttgtagGATGCTTGTGTATGAGTATGTAAATAATGGGAATTTGGAGCAGTGGCTTCATGGTGATGTAGGGCCTCGAAGTCCTCTTACTTGGGAGATTCGAATGAAT
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S568_2V6.1 (Physcomitrella patens), 3'ss of exon 3
---------gtactcttcatttcttactttcctctttaattaaccaaaattgcttcctttt----ttttttctttgattattattggtcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
|| ||||| || || | | | | | || | ||| | | | | ||| | | | | | | || || |||||||| || |||||||| |||||||| ||| | ||||||||||| ||||| | | | | | || | |||||| ||| |||
gtgaagcatttattcttcccacctggagtttttgtgtg-ccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggcttttgtagGATGCTTGTGTACGAGTACGTGGACAATGGGAATCTGGAGCAGTGGCTACATGGACCTCTGTCACAAACAAACACACTTCCATGGGAAGCTCGCATGCGG
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S358_6V6.1 (Physcomitrella patens), 3'ss of exon 2
------gtactcttcatttcttactttcctctttaattaac--caaaattgcttcctttttttttt---ctttgattattattggtcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAG-TCCTCTAACTTGGGAAATTCGAATGAAC
|| || ||| | | | || | | | | ||| | || ||| | | | | || | | | | ||||| |||||||| || |||||||| || ||||| || || ||||||||||||||||| | || || || | | || | |||||| || |||
gtgaatgtcatcccttcttcctgcccagtttgttgtgtggtggcgcagctccttgatgttctttgttgacctcgtttctggtggctgttgcagGATGCTTGTGTACGAGTACGTGGATAATGGAAACTTGGAGCAGTGGCTGCATGGACCT-CTGTCCCAAACAAATACACTTCCATGGGAAGCCCGCATGCGG
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ27863 (Selaginella moellendorffii), 3'ss of exon 3
gtactcttcatttcttactttcctctttaattaaccaaaattgcttccttttttttttctttgattattattgg-tcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
| | || | | | |||||| | || | | || ||| ||||| || ||||||||||| |||||||||||| | ||||||||||| || || | | || ||| ||| ||||| || | |||||
-----------------------------gtacgtcgaattctcatgaaagagtttttcactttggatgacgaacttctacagGATGCTGGTATATGAGTACGTAGACAATGGTAATCTGGAGCAGTGGCTTCACGGCCCAGCCTCCATTCTCAACTCTCCAACATGGGAGGTTAGGATGAAA
upper sequence: GLYMA01G39420.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ36811 (Selaginella moellendorffii), 3'ss of exon 3
gtactcttcatttcttactttcctctttaattaaccaaaattgcttccttttttttttctttgattattattgg-tcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
| | || | | | ||||||| | || | | || ||| ||||| || ||||||||||| |||||||||||| | ||||||||||| || || | | || ||| ||| |||||| |||| |||||
-----------------------------gtacgtcgaattctcgtgaaagattttttcactttggatgacgaacttctacagGATGCTGGTATATGAGTACGTAGACAATGGTAATCTGGAGCAGTGGCTTCACGGCCCAGCCTCCATTCTCAACTCTCCAACATGGGAAGTTCGGATGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192323263|gb|FK015269.1|FK015269EST: CACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAG AATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCA
genomic: CACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGgtactcttca ... ggtcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattaaccaaaattgcttccttttttttttctttgattattattggtcctgcagAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAAC
ttccttttttttttct TA-rich tract