1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcttatacaatttgtttacttttgcttgtgctagctctctatttcctgtgtaactattaacccattgtcatgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATG
species | Glycine max |
transcript | GLYMA01G39020.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAACTATATGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAT GCTCGCTTCTTCTTTCAACAACTCATATCTGAGGTCAGCTATTGTCATGCAEST: gi|19453479|gb|BM954889.1|BM954889
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
EST: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAG GCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAEST: gi|11412769|gb|BF424780.1|BF424780
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
EST: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAG GCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAEST: gi|14259499|gb|BG882407.1|BG882407
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
EST: GAGAACTATTTGAGAAAATCTGCAATGCAAGGCGTTTTAATGAGGATGAG GCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAEST: gi|21888347|gb|BQ741560.1|BQ741560
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
EST: GAGAGCTATTTGAGAAAATCTGCAATGCAGGGCATTTTAATGAGGATGAG GCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGTCATGCAEST: gi|27424851|gb|CA936371.1|CA936371
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
EST: GAGAGCTATTTGAGAAAATCTGCAATGCAGGGCATTTTAATGAGGATGAG GCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGTCATGCAEST: gi|18040782|gb|BM309076.1|BM309076
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
EST: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAG GCTCGTTTCTTCTTTCA-CAACTCATATCTGGGGTCAGCTATTGTCATGCEST: gi|58015395|gb|CX702137.1|CX702137
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGC
EST: GAGACCTA-TTGAGAAAATCTGCAATGCAGGGCGTTTAAATGAGGATGAG GCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
genomic: GAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGgttcttatac ... catgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCA
gcttgtgctagctctctatttcctgtgtaactattaacccattgtcatgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATG
tattaac putative branch site (score: 1)
taactattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttatacaatttgtttacttttgcttgtgctagctctctatttcctgtgtaactattaacccattgtcatgccacagGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATG
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