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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcatttaaatgcatttgtgatttgtatggtttttgaattttgagtgttattactacggttgctgattggtttatgatttcacagGAGGGACAGAAGCCTTCACAAATTATTAGTCCGCATCTGAACGTTGGAGGCCCCATCCAACCGGATGCTAGCAATGGAAACACTCAGGTTTTCATCAATG

Basic information

species Glycine max
transcript GLYMA01G38890.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38890.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 1
---gtattcatttaaatgcatttgtgatttgtatggtttttgaattttgagtgttattactacggttgctgattggtttatgatttcacagGAGGGACAGAAGCCTTCACAAATTATTAGTCCGCATCTGAACGTTGGAGGCCCCATCCAACCGGATGCTAGCAATGGAAACACTCAGGTTTTCATCAATG
         |||||  ||   || ||| || | ||   | | | |||  | ||||  |  ||    |    ||    ||  | ||  |||||| ||| |||||||||  || || |||||||| |||||||| |||||||| || ||    ||||| |||||||| ||||||||||| |||||||| || |
gtgaggaatatttac-tgttcttttgagttttgtg---tcttagtttctattgtttcttatatatatatatatgatgttggggttctacagGAAGGAGAGAAGCCTTATCAGATAATTAGTCCTCATCTGAATGTTGGAGGTCCTATTAGTCCGGAAGCTAGCAACGGAAACACTCAAGTTTTCATAAACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgaattttgagtgttattactacggttgctgattggtttatgatttcacagGAGGGACAGAAGCCTTCACAAATTATTAGTCCGCATCTGAACGTTGGAGGCCCCATCCAACCGGATGCTAGCAATGGAAACACTCAGGTTTTCATCAATG
                              tgctgat  putative branch site (score: 3)
                                        tttatgattt  TA-rich tract