1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttaaaagtgattcccttctccctagcggcctagccctgcaaagtgaaaaatgagagtacaatgatttattatggttttgatccattttgatgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAAT
species | Glycine max |
transcript | GLYMA01G38120.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|209698701|gb|BW660702.1|BW660702
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|213613578|gb|DB963280.1|DB963280
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|209720113|gb|BW651142.1|BW651142
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|209708951|gb|BW653492.1|BW653492
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAA-GAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|213589944|gb|DB969681.1|DB969681
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|209710662|gb|BW665074.1|BW665074
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|213601327|gb|DB956661.1|DB956661
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|208216880|gb|GE015206.1|GE015206
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAEST: gi|298164362|gb|HO014007.1|HO014007
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
gaaaaatgagagtacaatgatttattatggttttgatccattttgatgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAAT
ttttgat putative branch site (score: 4)
tacaatgatttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaaagtgattcccttctccctagcggcctagccctgcaaagtgaaaaatgagagtacaatgatttattatggttttgatccattttgatgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCAAAGGCTGCTGAGGAGCTTGAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - tgattcc
- - - - - - - - ttctccc
- - - - - - - - - - - - - - - - - ccctgca
- - - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg