Sequence
atgc intronic sequence ATGC exonic sequencegttcaacatatttaattaagtttatgtccacatatttaccttcttcaactatttaatcattatccaacatgttatgaatcttatgtttgaagctaatcaagtatgcggacaatgcattttttcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG
Basic information
| species | Glycine max |
| transcript | GLYMA01G38110.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G38110.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 3'ss of exon 5
gttcaacatatttaattaagtttatgtccacatatttaccttcttcaactatttaatcattatccaacat--gttatgaatcttatgtttgaagctaatcaagtatgcggacaatgcattttttcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG
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------------------------------------------------gtgataaactagtagcttgcattcatctacggttttttgttaagactacattgatgacattttgcatttgtttattcagGTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213596209|gb|DB960194.1|DB960194EST: GCGATATCAAAGCTGCAAATGTCCTTATTGATGATAGCTTCGAAGCAAAG GTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTA
genomic: GCGATATCAAAGCTGCAAATGTCCTTATTGATGATAGCTTCGAAGCAAAGgttcaacata ... attttttcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttatgaatcttatgtttgaagctaatcaagtatgcggacaatgcattttttcagGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGG
agctaat putative branch site (score: 3)
cattttttc putative PPT
attttttca TA-rich tract
