1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaatcactagcagtctgaaactccaaatcttacattttgcctacatagattattccatttaactcttgtttctagagaaataaattgatttccatggcagGTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG
species | Glycine max |
transcript | GLYMA01G37790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCAGGAGTTCCAGCTGTTTTCAACTGT GTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACAEST: gi|192330469|gb|FK021214.1|FK021214
genomic: GGCCAGGAGCTCCAGCTGTTTTCAACTGTgtaagctttt ... tccatggcagGTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: GGCCAGGAGCTCCAGCTGTTTTCAACTGT GTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACAEST: gi|192330470|gb|FK021215.1|FK021215
genomic: GGCCAGGAGCTCCAGCTGTTTTCAACTGTgtaagctttt ... tccatggcagGTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: GGCCAGGAGCTCCAGCTGTTTTCAACTGT GTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACAEST: gi|151412430|gb|EV282242.1|EV282242
genomic: GGCCAGGAGCTCCAGCTGTTTTCAACTGTgtaagctttt ... tccatggcagGTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACA
EST: GGCCAGAAGCTCCAGCTGTTTTCAACTGT GTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACA
genomic: GGCCAGGAGCTCCAGCTGTTTTCAACTGTgtaagctttt ... tccatggcagGTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACA
tagattattccatttaactcttgtttctagagaaataaattgatttccatggcagGTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG
tttccat CT-rich tract
agaaataaattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcactagcagtctgaaactccaaatcttacattttgcctacatagattattccatttaactcttgtttctagagaaataaattgatttccatggcagGTGGTTGAAATTGGCAAAGGCAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - cactagc
- - - - - - gtctgaa
- - - - - - - - - - ctccaaa
- - - - - - - - - - - - - - - - - ttttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa