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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttcttttgtccctttcatacataaatttgtaccgacttttggttttcagtgatgttattcttctgttatccacggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG

Basic information

species Glycine max
transcript GLYMA01G37480.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697785|gb|BW663924.1|BW663924
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|31469425|gb|CD411453.1|CD411453
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGT
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|15664810|gb|BI702173.1|BI702173
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|10844680|gb|BF067906.1|BF067906
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|9204241|gb|BE330465.1|BE330465
EST:     ACCAGCTTCAGGTTGATTTTCCTGAGAATTACCCAATGGAGGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|37994961|gb|CF806550.1|CF806550
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|209703743|gb|BW656876.1|BW656876
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|20813177|gb|BQ297655.1|BQ297655
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|27445947|gb|CA953070.1|CA953070
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
EST: gi|37996938|gb|CF808527.1|CF808527
EST:     ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAG                         GTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC
genomic: ACCAGCTTCAGGTCGATTTTCCTGAGAATTACCCGATGGAAGCTCCTCAGgttcttcttt ... ggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaccgacttttggttttcagtgatgttattcttctgttatccacggttttgcagGTGATATTCTTGCATCCGGCTCCGCTGCATCCCCATATCTACAGTAACGGCCATATTTGTTTAG
                       atgttatt  TA-rich tract