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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAGAACCTGATTGGTGCCTTTTACCAACCTCAGTGTGTGCTAATAGACACGG

Basic information

species Glycine max
transcript GLYMA01G36890.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36890.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G66120.2 (Arabidopsis thaliana), 3'ss of exon 3
gtcttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAGAACCTGATTGGTGCCTTTTACCAACCTCAGTGTGTGCTAATAGACACGG
                                               || |  |||     | |||    |  ||  ||  |  | ||  |  |   | |  |   | | | |   ||| |  | |       |  | || |       ||||| |||||||| || ||||||||||| || || ||||| || ||||| |||||  |||| ||||| ||||||||||| |||||||||||| ||||||| |
----------------------------------------------gtacatttttcacttcactgtaggaatttcttgtctaaaatcattaacatccag--aaaaaaggttttttatttctcgctg--caattcatttaattgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAGAATTTGATCGGTGCATTTTACCAACCACAGTGTGTGCTAGTAGACACTG

upper sequence: GLYMA01G36890.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03820.t01 (Vitis vinifera), 3'ss of exon 3
gtcttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAGAACCTGATTGGTGCCTTTTACCAACCTCAGTGTGTGCTAATAGACACGG
                                             |  | |          ||     |||| ||  |  || ||  ||  |    | || |    || | | |    | |      | |   |    | || | || | |||| |||||||||||||| ||||||||||| || || || |  || || || ||  |||||||||| || ||||||||||||||||| || |||||||| |
---------------------------------------------aaaaaaaaaccaaaaactaactttaatattctt--ttttaaacttggcacttatgttga--atttcagctggcttctgaaaaaataact---attttttttttctagGTGGATTCTTCAGTTGGAGGCAAAACTGGCATAAACCATCCTCTAGGAAAAAATTTGATTGGTGCTTTCTACCAACCTCAGTGTGTACTTATAGACACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325488|gb|FK018414.1|FK018414
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGA-G
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|151396219|gb|EV266096.1|EV266096
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|27426317|gb|CA937837.1|CA937837
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAA
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAA
EST: gi|151407393|gb|EV277208.1|EV277208
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAA-CTGG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGG
EST: gi|193687682|gb|FK633037.1|FK633037
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|151410909|gb|EV280724.1|EV280724
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|16281822|gb|BI944687.1|BI944687
EST:     CTACGTGGTGTTAATTTTATTCATTATTCCTACCACTGCT-ATGGCCCAG                         GCCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: CTACGTGGTGTTAATTTTATTCA-GATTCCTACCACTG-TGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAGAACCTGATTGGTGCCTTTTACCAACCTCAGTGTGTGCTAATAGACACGG
                                              tgttccc  CT-rich tract
                                         tattatgtt  TA-rich tract