1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttggtttgtaaacttattgtgttgtagcctcctgactccttagttttctttatcatttagaattgcatgttgtgtaacctgatctttttgagttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAG
species | Glycine max |
transcript | GLYMA01G36760.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTEST: gi|298168945|gb|HO020249.1|HO020249
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGACTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTEST: gi|207796984|gb|GD770306.1|GD770306
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTEST: gi|298198959|gb|HO042322.1|HO042322
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTEST: gi|298197843|gb|HO039382.1|HO039382
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTEST: gi|15663346|gb|BI700717.1|BI700717
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTEST: gi|208228660|gb|GE023254.1|GE023254
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTEST: gi|208037157|gb|GD836570.1|GD836570
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
ttctttatcatttagaattgcatgttgtgtaacctgatctttttgagttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAG
tatcatttagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtttgtaaacttattgtgttgtagcctcctgactccttagttttctttatcatttagaattgcatgttgtgtaacctgatctttttgagttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-tggtttg
- - - - - - - - - -tgttgta
- - - - - - - - - - - - - gcctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacctga