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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaacctactgtctgtgcctataatttcatgttttgaactgatctctctaacatttttatttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTACGCCTGTTTTCCTCACCCG

Basic information

species Glycine max
transcript GLYMA01G36410.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193513183|gb|FK469639.1|FK469639
EST:     CCACAGACTATGAATCAG                         ATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
genomic: CCACAGACTATGAATCAGgtattaacct ... ttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
EST: gi|9820326|gb|BE555836.1|BE555836
EST:     TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAG                         ATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
genomic: TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGgtattaacct ... ttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
EST: gi|6072998|gb|AW102385.1|AW102385
EST:     TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAG                         ATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
genomic: TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGgtattaacct ... ttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctataatttcatgttttgaactgatctctctaacatttttatttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTACGCCTGTTTTCCTCACCCG
                              ctctaac  putative branch site (score: 2)
 tttttatttactttt  CT-rich tract
 tctaacatttttattt  TA-rich tract