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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtacactcccactgtatgtttatattatttcttgaagagctatttctattctagcgatatctaattcttgtcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGCTGA

Basic information

species Glycine max
transcript GLYMA01G36260.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36260.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g02130.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------gtgaga-gtacactcccactgtatgt-----ttatattatttcttgaagagctatttctattctagcgatatctaattcttgtcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGCTGA
                                    || |    || |   |     |       ||  ||||  |||   | |  ||| |  | | |    ||||||| | ||||  |   |||| | || | ||| ||||||| ||| || ||  |||||||||| ||||||||||| ||||| || |||||||| ||||| || |||||||||  | | ||| 
gtgagcacattatgcctctatttcggtttgctttccgaaatactcatttttagcacttacccgcctttcattagctctctgacaattatatgcaatatccatatatcta-tgcttgataa--gcagGTAGCCATTGGGGGAGCTCGATCAAAAGACCTCTTTGACAGACATGGGGATCTGAAAAGAATCCGAAGGCTGAAATTCTGGCCACTTGACCGAATACTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396697|gb|AI495694.1|AI495694
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG                         ATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtgagagtac ... tcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
EST: gi|254344045|gb|GR850955.1|GR850955
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG                         ATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtgagagtac ... tcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
EST: gi|14008938|gb|BG725542.1|BG725542
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG                         ATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtgagagtac ... tcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
EST: gi|8827190|gb|BE210920.1|BE210920
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG                         ATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtgagagtac ... tcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
EST: gi|10234462|gb|BE803350.1|BE803350
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG                         ATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtgagagtac ... tcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
EST: gi|254344274|gb|GR851077.1|GR851077
EST:     GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAG                         ATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT
genomic: GATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGgtgagagtac ... tcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttcttgaagagctatttctattctagcgatatctaattcttgtcagttgcagATTGCTACTGGTGGAGCTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTTGACAAATTGCTGA
                                 atctaat  putative branch site (score: 3)
                                       ttcttgtc  CT-rich tract
               tatttctatt  TA-rich tract