1 5' 3' | 2 5' 3' | 3 5' 3' |
...caaaaattgcttgtgtctttgattatgatccctgagaataataataatggcaatgcatgccacctttcaatttgatatacgtcacggtttaatggtgcagGTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTTAATTTACTAGGAGTAAAGGGTGCGAGCAAAGAGTCCCCAGGTGCAAATT
species | Glycine max |
transcript | GLYMA01G36080.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCCTTGAG GTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTTEST: gi|58016351|gb|CX703093.1|CX703093
genomic: TGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCCTTGAGgtatgcttaa ... aatggtgcagGTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTT
EST: TGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCCTTGAG GTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTTEST: gi|21257356|gb|BQ454244.1|BQ454244
genomic: TGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCCTTGAGgtatgcttaa ... aatggtgcagGTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTT
EST: TGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCCTTGAG GTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTT
genomic: TGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCCTTGAGgtatgcttaa ... aatggtgcagGTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTT
aatggcaatgcatgccacctttcaatttgatatacgtcacggtttaatggtgcagGTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTTAATTTACTAGGAGTAAAGGGTGCGAGCAAAGAGTCCCCAGGTGCAAATT
gtttaat putative branch site (score: 4)
tttcaatttgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaattgcttgtgtctttgattatgatccctgagaataataataatggcaatgcatgccacctttcaatttgatatacgtcacggtttaatggtgcagGTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAATCAGCATGCCTTAATTTACTAGGAGTAAAGGGTGCGAGCAAAGAGTCCCCAGGTGCAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - -tgcttgt
- - - - - - - gtctttg
- - - - - - - - - - - - - - tccctga
- - - - - - - - - - - - - - - - - - - - - - - - - caatgca