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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcatgtaattttacacttgatgagcaaaattttaaggggttgttatttgagccaaattaactttgattacattctaagctattagtttgtttatatcagatcacttgtttttattttttccgagacatacacctaaatggcttatatttataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAGCCTCCGAA

Basic information

species Glycine max
transcript GLYMA01G36040.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36040.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0044g01840.t01 (Vitis vinifera), 3'ss of exon 3
gtattcatgtaattttacacttgatgagcaaaattttaaggggttgttatttgagccaaattaactttgattacattctaagctattagtttgtttatatcagatcacttgtttttattttttccgagac-atacacc-taaatggcttatatttataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAGCCTCCGAA
                                                            |||   |  ||  ||   |  ||||||  ||   || |  || |    || | || ||  ||||| | || ||| |    || ||  || || || |  ||||||||||||||| ||| | |||||||||||||||||||| || || || || ||
-----------------------------------------------------------tttataatccatagcagggtgcgctatt--ttcaatttt--caaaattattctgttgataatttccaatactatataatacaagtgtattctacttgtggatagGTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAACCCCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566725|gb|AW234357.1|AW234357
EST:     GCTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAG                         GTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTNTCAAACCTC
genomic: GCTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGgtattcatgt ... ttataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAGCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtttttattttttccgagacatacacctaaatggcttatatttataaatagGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAGCCTCCGAA
                            acctaaa  putative branch site (score: 3)
                               taaatggcttatattt  TA-rich tract