1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtattattgattttgttcagaattttggtaataatttgaggattcgctttcttcctttgaactaggtttctaacaatttttggttgtgatttagGTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTTAGGATGGATCCTTATCAAATTAACAAGGGCTCCCAAACACTTGGAAGGG
species | Glycine max |
transcript | GLYMA01G36030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATT GTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTTEST: gi|207794189|gb|GD767607.1|GD767607
genomic: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATTgtgagtatta ... tgtgatttagGTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTT
EST: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATT GTGGTTCATGCCGGTCAATATCCTEST: gi|9204548|gb|BE330772.1|BE330772
genomic: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATTgtgagtatta ... tgtgatttagGTGGTTCATGCCGGTCAATATCCT
EST: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATT GTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTTEST: gi|151396933|gb|EV266806.1|EV266806
genomic: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATTgtgagtatta ... tgtgatttagGTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTT
EST: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATT GTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTTEST: gi|207774233|gb|GD743691.1|GD743691
genomic: GTGGGTGGCAATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATTgtgagtatta ... tgtgatttagGTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTT
EST: AATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATT GTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTT
genomic: AATTTGGCCGACACGATTACTTTTGAGAATGTTGTTTTATTgtgagtatta ... tgtgatttagGTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTT
ggattcgctttcttcctttgaactaggtttctaacaatttttggttgtgatttagGTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTTAGGATGGATCCTTATCAAATTAACAAGGGCTCCCAAACACTTGGAAGGG
ttctaac putative branch site (score: 1)
tttctaacaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattattgattttgttcagaattttggtaataatttgaggattcgctttcttcctttgaactaggtttctaacaatttttggttgtgatttagGTGGTTCATGCCGGTCAATATCCTCTTGACGTTTATAATAGGCTCTGCCTTAGGATGGATCCTTATCAAATTAACAAGGGCTCCCAAACACTTGGAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG