1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaaatcacaatgccccctgttgtttacgaagttctgcatagtttcttatgatcatgctcaattttggaattctgattaaaatttggtgtatgtgatgcagGACCCAGATGATAGTCTGAAACGAAAAACTTTCGAACTGTTATACAAAATGACCAAGTCCTCCAATGTGGAAGTGATTGTTGACAGAATGATTGATTACA
species | Glycine max |
transcript | GLYMA01G35650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCCACATATTGCAGAACAACACCAACTGGCCGTCATTGACTGCTTGGAG GACCCAGATGATAGTCTGAAACGAAAAACTTTCGAACTGTTATACAAAATGEST: gi|208277887|gb|GE074894.1|GE074894
genomic: GTCCACATATTGCAGAACAACACCAACTGGCCGTCATTGACTGCTTGGAGgtgaggaatg ... tgtgatgcagGACCCAGATGATAGTCTGAAACGAAAAACTTTCGAACTGTTATACAAAATG
EST: GTCCACATATTGCAGAACAACACCAACTGGCCGTCATTGACTGCTTGGAG GACCCAGATGATAGTCTGAAACGAAAAACTTTCG
genomic: GTCCACATATTGCAGAACAACACCAACTGGCCGTCATTGACTGCTTGGAGgtgaggaatg ... tgtgatgcagGACCCAGATGATAGTCTGAAACGAAAAACTTTCG
ttatgatcatgctcaattttggaattctgattaaaatttggtgtatgtgatgcagGACCCAGATGATAGTCTGAAACGAAAAACTTTCGAACTGTTATACAAAATGACCAAGTCCTCCAATGTGGAAGTGATTGTTGACAGAATGATTGATTACA
ttctgat putative branch site (score: 3)
aattctgattaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatcacaatgccccctgttgtttacgaagttctgcatagtttcttatgatcatgctcaattttggaattctgattaaaatttggtgtatgtgatgcagGACCCAGATGATAGTCTGAAACGAAAAACTTTCGAACTGTTATACAAAATGACCAAGTCCTCCAATGTGGAAGTGATTGTTGACAGAATGATTGATTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- aatcaca
- - - - - - ccccctg
- - - - - - - - - - - - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttggtg