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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaatgtacggtgttagctgttctggtggtcattcattttataattatacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCT

Basic information

species Glycine max
transcript GLYMA01G35490.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35490.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G135909_T01 (Zea mays), 3'ss of exon 3
-----gtaagttcaatgt-acggtgttagctgttc--tggtggtcattcattttataatt-----atac-aagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTC---GCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCT
       || |  |   | ||  | ||   ||  |   ||   |  ||   ||  | | |     |||| || ||| ||  || |   |||     | |||||||||||||||||||||| ||||||   |  ||||| ||     | || ||  | || || || || || |||||||| || |  ||  |||| ||     
ttagtccaaatctaggattacattcttttttggacgaaggcaatagttttgttcttgactggaggatactaacttgcatccttatggttatgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCATCATTTTCTTCAATTGGATCCGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: GLYMA01G35490.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G060999_T01 (Zea mays), 3'ss of exon 3
---------------------------------------------------------------------------------------------------gtaagttcaatgtacggtgttagctgttctggtg--gtcattcattttataattatac-aagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTC---GCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCT
                                                                                                     | || | |   |     |||| | |  | ||   ||  || | |  | ||  |||| || ||| ||  ||||   ||||    | |||||||||||||||||||||| ||||||   |  ||||| ||     | ||  |  | || || || || ||||||||||| || |  ||  |||| ||     
gtacgttgtgcaaatatacgtactgcctctgtccaaaaaatgattgtaattctcgcttttaataagtcaatcaatatcaagtttgatcaaatagatacaaaaggtactaataatatcattagat-taatagtaatgttcttgactgaagaaggatactaacttgcatccttgtggttattactttcagGTTCTGGATGAAATTCACCACCAATCTGCTGCGTTATCGTCATCAAGACCAGCGTTTTCTTCAATTGGATCTGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: GLYMA01G35490.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G45290.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaagttca-atgtacggtgt------tagctgttctggtggtcatt-cattttataattatacaagttgaatatttgta-catattttaattagGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTCGCC---CTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCT
|||| | ||  | | |||| |      || | | | |  | | || |   |||  |  | ||  | | | |  || |  |    |||    ||||||||| ||||||||||| ||||||||| | || ||||| ||||  |   | || || |||||||| || ||||||||||||||||| || |||||||| |   
gtaaatacatgttttcggtctccctactaacagcttt--ttgccactatctttctttctcatgtatgctaaggatctacagtgcattcattttagGTTCTTGATGAAATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATT---

upper sequence: GLYMA01G35490.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
-------------gtaagttcaatgtacggtgttagctgttctggtggtcattcattttataatt--atacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCT
              | | |  | | |  | || |  || |||  ||  |  ||| || ||| |||  ||| ||||||||| ||| |  |||  |    |||||||||||||||||||||||||||||| |||| ||||| || || |||||||| || ||||| |||||||||||||| || ||||||||||| ||||| |
gtgatgctaatatattattatattttgtgatggtcacttttccagtatt--ttctttgtatcattcaatataagttgaatttttttttataccta---tagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtcattcattttataattatacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCT
          attttataattataca  TA-rich tract