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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccacatcttgccgaactttctgtagccttatttgtcattcattgttggatatgtatataattattctctaattttccttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG

Basic information

species Glycine max
transcript GLYMA01G35190.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35190.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 3
gttccacatcttgccgaactttctgtagccttatttgtcat-tcattgttggatatgtatataattattctctaattttccttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG
            |   |||  | | ||    |  |  |  | |   | ||  || | | ||||  |  | |  ||||||   | ||  ||||||||  | || ||||| |||||||| ||||||||||| | ||||||  || | |||| |||||||||||||||||| ||||| ||||||
------------gtaaaacagtttatacttctgctcttattattgctattttatttctgtata--tggttttaaattttttctttttgcagTCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336468|gb|GR842647.1|GR842647
EST:     AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
genomic: AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgttccacatc ... ttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
EST: gi|254345622|gb|GR855958.1|GR855958
EST:     AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
genomic: AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgttccacatc ... ttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
EST: gi|14205773|gb|BG839451.1|BG839451
EST:     AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
genomic: AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgttccacatc ... ttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
EST: gi|192299757|gb|FG990052.1|FG990052
EST:     AAACCTGAGAGAAGTCAAG                         TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
genomic: AAACCTGAGAGAAGTCAAGgttccacatc ... ttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
EST: gi|208067113|gb|GD862205.1|GD862205
EST:     AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAAGTTAT
genomic: AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgttccacatc ... ttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAA-GTTAT
EST: gi|26048711|gb|CA785164.1|CA785164
EST:     GTAAACCTGAGAGAAGTCAAG                         TCATTACGTAAAATCAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
genomic: GTAAACCTGAGAGAAGTCAAGgttccacatc ... ttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
EST: gi|22522544|gb|BU081355.1|BU081355
EST:     AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT
genomic: AGAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgttccacatc ... ttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcattcattgttggatatgtatataattattctctaattttccttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG
                                 ctctaat  putative branch site (score: 3)
                               ttctctaattttcctt  CT-rich tract
                atatgtatataattat  TA-rich tract