1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atagtaagacttcatatttttcctgttactataacattgataattgtaaattgtaaatcccttaccttttctaatatgatttgattaaatcttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACATTTCATAACATTCTTTAGCGATGGAGAAATTCCTGGAACACCTGGCTCTC
species | Glycine max |
transcript | GLYMA01G34270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCGCATEST: gi|192314970|gb|FK010788.1|FK010788
genomic: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacac ... cttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
EST: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACATEST: gi|13240177|gb|BG359486.1|BG359486
genomic: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacac ... cttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
EST: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
genomic: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacac ... cttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
gtaaattgtaaatcccttaccttttctaatatgatttgattaaatcttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACATTTCATAACATTCTTTAGCGATGGAGAAATTCCTGGAACACCTGGCTCTC
ttttctaatatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtaagacttcatatttttcctgttactataacattgataattgtaaattgtaaatcccttaccttttctaatatgatttgattaaatcttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACATTTCATAACATTCTTTAGCGATGGAGAAATTCCTGGAACACCTGGCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -gacttca
- - - - - - - - - - -cctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg