Sequence
atgc intronic sequence ATGC exonic sequencegtctgcttgtttctctcactcttaccaacagtccatatttttatgccagttttgttgttcttagaagcatttcatttttctgtttctcattctggttttttacctttgtcctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
Basic information
| species | Glycine max |
| transcript | GLYMA01G30400.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G30400.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 3'ss of exon 3
------------------gtctgcttgtttctctcactcttaccaacagtccatatttttatgccagttttgttgttct-tagaagcatttcattt----ttctgtttctcattctggttttttacctttgtcctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
| ||||| || | | | || | | | | ||| | || | || | |||| ||| || | | | | | | ||||| || | || |||||| | || | |||||| | || || ||| ||| ||||| ||||| ||||||| ||||||||||| ||||||||||| || || ||||||||||
gttagtcaatcaatcaaattatgctttcttatgcctatagtaatgatgttatgtgctccccatccaatagcaacatttgatcgacacctttcttttggcattttatctacgactaaactgctttacggtttgttttat-tcagTGCGCAGCTTACACTGCACCTGCTAACTCTCAAACAACTTGGACAATGCGCGCTACCTTCCCTGAATATGTGGTTGCTCTTGCTACCATCGTTGGATCTG
upper sequence: GLYMA01G30400.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G871262_T02 (Zea mays), 3'ss of exon 3
gtctgcttgtttctctcactcttaccaacagtccatatttttatgccagttttgttgttcttagaagcatttcatttttctgtttctcattctggttttttacctttgtcctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
||| ||| | ||| || | ||||||| | || | | | |||| | | | ||| | || | | | | |||||| | || | ||||| || || ||| ||| ||||| |||||| ||||||| ||||||||||| ||||||||| | || |||||||||||||
----ttgtgtgtctttggttctc-----cattttccggctttatgcaacaattagggct-----acagatttggtgactagatg----gaactgacctcc--cccatattgtgtttacagTGTGCGGCTTCTACTGCACCGGCTAACTCGCAAACAACTTGGACAATGCGTGCTACCTTCCCTGAATATGTGGTTGCTCTTACTACAATTGTTGGATCTG
upper sequence: GLYMA01G30400.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G012284_T01 (Zea mays), 3'ss of exon 1
gtctgcttgtttctctcactcttaccaacagtccatatttttatgccagttttgttgttcttagaagcat-ttcatttttctgtttctcattctggttttttacctttgtcctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
|| || | ||| || || | | | || || | || | | | |||| | | | || | | | | ||||||| | || | ||||| || || ||| ||| ||||| |||||| ||||||| ||||||||||| ||||||||| | || |||||||||||||
--------------------tttgtcagta-tccttagttctctacttccccactttatccaacaattaggcctagagatttgttgactagttgcaactgacctctgtcttgtgttttcagTGTGCGGCTTCTACTGCACCGGCTAACTCGCAAACAACTTGGACAATGCGTGCTACCTTCCCTGAATATGTGGTTGCTCTTACTACAATTGTTGGATCTG
upper sequence: GLYMA01G30400.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 3'ss of exon 3
gtctgcttgtttctctcactcttaccaacagtccatatttttatgcca--gttttgttgttcttagaagcatttcatttttctgtttctcattctggttttttacctttgtcctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
|| || ||| |||| || || || ||||||| || | || | | || ||||| || | |||| || | | | | ||| ||||| || ||||| || || | ||| |||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || |||||||| || |
gtatgtttg--cctcttgaatgtagcattagcattagtttttatatcatgagtcatttatgccgtagagagtttcagcatttaacat---attcctgtctctggc-----tatcaatg-cagTGCTCAGCATTTACAGCTAATCCCACATCTGAGAAAACATGGACTATGCGTACTACTTTTCCAGAATATGTTGTTGCTCTTGCGACAATTGTTGGGTCAG
upper sequence: GLYMA01G30400.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 3
-----gtctgcttgtttctctcactcttaccaacagtccatatttttatgccagttttgttgttcttagaagcatttcatttttctgtttctcattctggttttttacctttgtcctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
| ||||| || |||| | ||| || || | ||| | || | | |||||| | | | || |||| | | | | | | | ||||| || |||| || || | | || | || ||||| |||||| ||||||||||||| ||||| |||||||| ||||||||||| || || ||||| || |
gtaatactttaaattttcttgcattcttgttatgagttt---ttctttcgttagtctctatgc---aaaatatatttcagtatgtaaaatatc-ttctcttctccttggtatattg-atcggcagTGCTCAGCATATACAGCTAATGCTGCGTCTGAAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCGTTGGGTCAG
upper sequence: GLYMA01G30400.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtctgcttgtttct----ctcactcttaccaacagtccatatttt---tatgccagttttgttgttcttagaag--catttc-----atttttctgtttctca------------ttctggttttttacctttgtc---ctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
| || || | ||| || | | || || ||| ||| || | | || || ||| || || || || ||| || | ||| | || | | | ||||| || | |||||| ||||||| |||| ||| ||||||| || ||||||||||| ||||| ||||| ||||| |||||||| ||||||||||| || ||||| |||||||
gttctatttccattcatttgattatctctgaagttccattgttgcaggagataatactttctgtacctcgttcttatttcccttttgagattatctcttgctatatttttggtcatcacaaatataaatatccttatcctgtgccttttcttctcttttttcagTGCTCTGCATATTCTGCAAGTGCTTCATCTGAGAAAACATGGACTATGCGCACTACTTTTCCAGAATATGTTGTTGCTCTTGCTACCATTGTCGGATCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23057508|gb|BU578182.1|BU578182EST: GCACATGGGACTTCAATAGTGGTCAACAATGTATTGGAAACACCCATCAG TGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGT
genomic: GCACATGGGACTTCAATAGTGGTCAACAATGTATTGGAAACACCCATCAGgtctgcttgt ... ctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcatttcatttttctgtttctcattctggttttttacctttgtcctaatatcagTGTTCTGCATTCACTGCCAGTCCTTCATCAGAAAAAACATGGACCATGCGTACTACCTTTCCTGAATATGTCGTTGCTCTTGCCACTATTGTTGGATCTG
tcctaat putative branch site (score: 2)
ttttttacctttgtcc CT-rich tract
ttcattttt TA-rich tract
