Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttttacacaagtgcacaactttcctttctttttccacacattatcgcatagaaaagaaaaaagttatattttcaagacttcaagtattttttttttgttggtattgatgcaattattctttacatccatatttatttctatgaaatttgacccaaaatcgctatggttgtcagAGCCTTTCAAAGAAGACTCGCATAATATTTCTCAGTTCCCCTCCCATCAATGAGGTGCAAATGCATGAAACTCTCAG

Basic information

species Glycine max
transcript GLYMA01G30390.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23052742|gb|BU577233.1|BU577233
EST:     CCCTCCAAGAATACATTGAAAATATGAGGAAGATCGTTATCCATCTTAAG                         AGCCTTTCAAAGAAGACTCGCATAATATTTCTCAGTTCCCCTCCCATCAAT
genomic: CCCTCCAAGAATACATTGAAAATATGAGGAAGATCGTTATCCATCTTAAGgtaaactttt ... tggttgtcagAGCCTTTCAAAGAAGACTCGCATAATATTTCTCAGTTCCCCTCCCATCAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacatccatatttatttctatgaaatttgacccaaaatcgctatggttgtcagAGCCTTTCAAAGAAGACTCGCATAATATTTCTCAGTTCCCCTCCCATCAATGAGGTGCAAATGCATGAAACTCTCAG
                          atttgac  putative branch site (score: 4)
         atatttatttctatga  TA-rich tract