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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttccctttttatttgagtggaacatcaattattatcacctcctgttactctttttccaaaatataatgtccctaatatatttcagTGACTTTAAAGATATCTTTGACTGGAGGCACTTCATGAAAGTTTTGAAAGACGACATTGAGATAGTTGAGTACTTGCCGGTCCAATATGCATCATTGAAA

Basic information

species Glycine max
transcript GLYMA01G27000.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27000.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G37980.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaaattttccctttttatttgagtggaacatcaattattatcacctcctgttactctttttccaaaatataatgtccctaatatatttcagTGACTTTAAAGATATCTTTGACTGGAGGCACTTCATGAAAGTTTTGAAAGACGACATTGAGATAGTTGAGTACTTGCCGGTCCAATATGCATCATTGAAA
     |||  |   |||| |    |  |||   |  |||||||          | |    ||  || | ||| | |   | ||   || ||||   || |||||||| ||||||||||| ||||||||||| || |||||||| ||  |||| || || |||||||| ||   || ||||||| |  ||| |
---gttttatctcatttactc---tataacg--agatattatccaagaaaagaagtggaatttgaagagatattctttgtgat---ttgcagTACTTTCAAAGATATTTTTGACTGGAGACACTTCATGAACGTATTGAAAGATGATGTTGACATTGTCGAGTACTTACCTCCCCGATATGCAGCCATGAGA

upper sequence: GLYMA01G27000.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 4
---gtaaattttcccttttta-tttgagtggaacatcaattattatcacctcctgttactctttttccaaaatataatgtccctaatatattt-cagTGACTTTAAAGATATCTTTGACTGGAGGCACTTCATGAAAGTTTTGAAAGACGACATTGAGATAGTTGAGTACTTGCCGGTCCAATATGCATCATTGAAA
    | |||||    || ||| ||   ||   | || ||||   ||   ||  | || || ||      || || |     |||  ||| ||| |||||| ||||||||||| |||||||||| ||| |||||  | ||||| || || || ||||||||||||   |  |||||     |||||||| || | || 
gtattgaatttgagtttattaattcttgttttagattaatttgaatt--ctgatcttgcttttaactataattaca----tcctggtatttttgcagTGATTTTAAAGATATTTTTGACTGGAAGCATTTCATAGAGGTTTTAAACGATGATATTGAGATAGTTCCATCTTTGCCACAGAAATATGCAGCAATTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatcacctcctgttactctttttccaaaatataatgtccctaatatatttcagTGACTTTAAAGATATCTTTGACTGGAGGCACTTCATGAAAGTTTTGAAAGACGACATTGAGATAGTTGAGTACTTGCCGGTCCAATATGCATCATTGAAA
                                       ccctaat  putative branch site (score: 3)
                    tttttccaaaatataa  TA-rich tract