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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatgcattgttttctttccaaacactaatttggtattccatgtttgtgttaatatttatagcatcagcagctagagataccaagccaaaaaaatgacagGTTGAGTTCAATGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCTTGGGATAATAATCTTTCTTGGTCATGGGAAAATGCAATCAATGCCCTCC

Basic information

species Glycine max
transcript GLYMA01G25690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G25690.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g05750.t01 (Vitis vinifera), 3'ss of exon 4
gtgcatgcattgttttctttccaaacactaatttggtattccatgtttgtgttaatatttatagcatcagcagctagagatacca-agccaaaaaaatgacagGTTGAGTTCAATGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCTTGGGATAATAATCTTTCTTGGTCATGGGAAAATGCAATCAATGCCCTCC
 |  |  |      ||| |    || |   ||      ||   | ||| | |  ||||||  |  | ||  |  || | |||  | | |  |  ||||||||||| ||||| ||||||||||||||| | ||| | ||| | | ||||||||| |||||||||   ||||| ||| |||||||||| |||||   ||| || |
ttctaaaccagagattcatagggaaaat--atgcatctttatttttttttttggatatttggaa-aacaaaaaataaaaatattacatcttactaaatgacagGTGGAGTTTAATGAGCTTGAAGGAAGTTCAGTTCTTGCTACAACTATTGCATGGGATAATGCCCTTTCATGGACATGGGAAAAGGCAATTGGTGCACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttaatatttatagcatcagcagctagagataccaagccaaaaaaatgacagGTTGAGTTCAATGAGCTTGAAGGAGGATCAATGCTTACCATAACTATTGCTTGGGATAATAATCTTTCTTGGTCATGGGAAAATGCAATCAATGCCCTCC
  tgttaat  putative branch site (score: 3)
     taatatttatagcat  TA-rich tract