1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccatttcaagtgtctgacttgagtctaagttccatttgatttttagctgatctcatgctagattggcattttactttaacaatttttttctgttttccagAGTTGCAGGATATTCTCCCCAACATCATCCACCAATTAG
species | Glycine max |
transcript | GLYMA01G18780.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCACCACAAACAAAGA AGTTGCAGGATATTCTCCCCAACATCATCCACCAATTAG
genomic: ATCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCACCACAAACAAAGAgtaagcttat ... tgttttccagAGTTGCAGGATATTCTCCCCAACATCATCCACCAATTAG
gctgatctcatgctagattggcattttactttaacaatttttttctgttttccagAGTTGCAGGATATTCTCCCCAACATCATCCACCAATTAG
ctttaac putative branch site (score: 3)
tttttttctgttttcc putative PPT
attttactttaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatttcaagtgtctgacttgagtctaagttccatttgatttttagctgatctcatgctagattggcattttactttaacaatttttttctgttttccagAGTTGCAGGATATTCTCCCCAACATCATCCACCAATTAG
ccatttc
- - - - -gtgtctg
- - - - - - - - - - - - - - - -ccatttg
- - - - - - - - - - - - - - - - - - - - - - -gctgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcattt