Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgcgtgccacccttgtttgtgaattgtgatcttagagttcattaatcatgattgaagaacacatataaaaggttgattatttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG

Basic information

species Glycine max
transcript GLYMA01G07470.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193486374|gb|FK449592.1|FK449592
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208034195|gb|GD837619.1|GD837619
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGAC
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGAC
EST: gi|208128626|gb|GD927072.1|GD927072
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193405964|gb|FK375161.1|FK375161
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAG
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAG
EST: gi|208236485|gb|GE032911.1|GE032911
EST:     AGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAG
genomic: AGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAG
EST: gi|193483902|gb|FK451927.1|FK451927
EST:     AGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: AGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193692142|gb|FK630621.1|FK630621
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193496251|gb|FK463307.1|FK463307
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207713553|gb|GD696236.1|GD696236
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACAT
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACAT
EST: gi|193329068|gb|FK293072.1|FK293072
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGGACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193500859|gb|FK464978.1|FK464978
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAA
EST: gi|207718440|gb|GD700446.1|GD700446
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207746533|gb|GD720204.1|GD720204
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207707421|gb|GD688697.1|GD688697
EST:     TGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: TGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208223336|gb|GE024399.1|GE024399
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207738350|gb|GD716114.1|GD716114
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193314956|gb|FK282128.1|FK282128
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207682804|gb|GD666421.1|GD666421
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208227143|gb|GE023614.1|GE023614
EST:     AATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAA
genomic: AATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCC-AAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAA
EST: gi|193649413|gb|FK595024.1|FK595024
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAG
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAG
EST: gi|193693539|gb|FK633317.1|FK633317
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193453550|gb|FK419914.1|FK419914
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193616912|gb|FK570616.1|FK570616
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193326956|gb|FK287839.1|FK287839
EST:     ATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAAC
genomic: ATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAAC
EST: gi|208045285|gb|GD839777.1|GD839777
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207839304|gb|GD811205.1|GD811205
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193594689|gb|FK547626.1|FK547626
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208034466|gb|GD833816.1|GD833816
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208124061|gb|GD921953.1|GD921953
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193596181|gb|FK551840.1|FK551840
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208101572|gb|GD900093.1|GD900093
EST:     AACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: AACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207808663|gb|GD779474.1|GD779474
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193699567|gb|FK639882.1|FK639882
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207693375|gb|GD674978.1|GD674978
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193616908|gb|FK570612.1|FK570612
EST:     GAATTTCTTGGAG                         GTTCC-AAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: GAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193374226|gb|FK342006.1|FK342006
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208039752|gb|GD838480.1|GD838480
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193463266|gb|FK428660.1|FK428660
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAAC
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAAC
EST: gi|208305629|gb|GE109070.1|GE109070
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207761876|gb|GD734149.1|GD734149
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208259327|gb|GE053841.1|GE053841
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAG
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAG
EST: gi|193654145|gb|FK596041.1|FK596041
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207836532|gb|GD805745.1|GD805745
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACA
EST: gi|208316984|gb|GE112797.1|GE112797
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208054704|gb|GD850635.1|GD850635
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193630844|gb|FK585055.1|FK585055
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193303576|gb|FK271636.1|FK271636
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208268503|gb|GE072060.1|GE072060
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCT-GGAG                         GTTCCAAAAATCACA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACA
EST: gi|207803860|gb|GD773589.1|GD773589
EST:     AGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAAC-AAAA
genomic: AGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207727193|gb|GD704349.1|GD704349
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193309589|gb|FK275473.1|FK275473
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193587881|gb|FK539150.1|FK539150
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208308317|gb|GE109661.1|GE109661
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAA
EST: gi|208027946|gb|GD823138.1|GD823138
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193677663|gb|FK616573.1|FK616573
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193632970|gb|FK580118.1|FK580118
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAAC
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAAC
EST: gi|207802265|gb|GD773047.1|GD773047
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208031366|gb|GD827094.1|GD827094
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207688410|gb|GD672203.1|GD672203
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208250049|gb|GE049130.1|GE049130
EST:     CGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|8282859|gb|BE020420.1|BE020420
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208116499|gb|GD914530.1|GD914530
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGAC
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGAC
EST: gi|208105387|gb|GD902802.1|GD902802
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207726930|gb|GD702896.1|GD702896
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTTGGAAAAACATGACAGAAGAACAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGT-GGAAAAACATGACAGAAGAACAAAA
EST: gi|207757087|gb|GD730045.1|GD730045
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAG
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAG
EST: gi|193600520|gb|FK553837.1|FK553837
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCCCATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207710412|gb|GD692412.1|GD692412
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208142364|gb|GD935362.1|GD935362
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207810862|gb|GD782531.1|GD782531
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACNTGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208137247|gb|GD937155.1|GD937155
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193458248|gb|FK422511.1|FK422511
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|208034076|gb|GD827812.1|GD827812
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193642690|gb|FK594116.1|FK594116
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAACCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193446044|gb|FK414451.1|FK414451
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207806628|gb|GD776515.1|GD776515
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193633015|gb|FK580163.1|FK580163
EST:     CGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193676821|gb|FK617887.1|FK617887
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCC-AAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAA
EST: gi|193527127|gb|FK483365.1|FK483365
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAG
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAG
EST: gi|193307913|gb|FK271991.1|FK271991
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|193713235|gb|FK654430.1|FK654430
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
EST: gi|207789717|gb|GD761779.1|GD761779
EST:     CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAG                         GTTCCAAAAATCACATCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA
genomic: CTAATGATAGGCGAGCAGCTCTTGCTGCCGAGAACAAGAATTTCTTGGAGgtaattgcgt ... ttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcattaatcatgattgaagaacacatataaaaggttgattatttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG
                         acatataaaaggttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattgcgtgccacccttgtttgtgaattgtgatcttagagttcattaatcatgattgaagaacacatataaaaggttgattatttaaattcagGTTCCAAAAATCACATTCGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCCTATGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA