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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgtttgtctgtttgatcttgtgttttagcactgaactagctcataaattatttatattatacactataccgtcatttgattttcactaatgttttaattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACT

Basic information

species Glycine max
transcript GLYMA01G07070.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G07070.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g00620.t01 (Vitis vinifera), 3'ss of exon 3
gtacgtgtttgtctgtttgatcttgtgtttta-gcactgaactagctcataaattatttatattatacactataccg-tcatttgattttcactaatgtt-ttaattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACT
              ||   ||||  |     |  ||  ||   |        ||| | | ||  ||   |||   || ||| ||||| | | ||    ||  || || | ||||||| ||   |||||| ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||| |
--------------gtgacatctcttaacaaacacatagagtcaatgttcgtatt-tatgtaacattttctaattcgatcacttgatataccctttctttgctatttgttagGCTGCCTCCAGCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300602|gb|FG988899.1|FG988899
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|12773324|gb|BG238251.1|BG238251
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|7590427|gb|AW706180.1|AW706180
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|37996365|gb|CF807954.1|CF807954
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|58019744|gb|CX706486.1|CX706486
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|58019157|gb|CX705899.1|CX705899
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|58015355|gb|CX702097.1|CX702097
EST:     GGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: GGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|58019309|gb|CX706051.1|CX706051
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|58022129|gb|CX708870.1|CX708870
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|192302132|gb|FG995812.1|FG995812
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|18735497|gb|BM528797.1|BM528797
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|58018950|gb|CX705692.1|CX705692
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAG                         GCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAACAGTCACTGAAAGGATACGAGgtacgtgttt ... taattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatattatacactataccgtcatttgattttcactaatgttttaattatcagGCTGCTTCAGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACT
                        atttgattttcactaa  TA-rich tract